Locus 8181

Sequence ID 3L_DroMel_CAF1
Location 21,527,230 – 21,527,321
Length 91
Max. P 0.552694
window13387

overview

Window 7

Location 21,527,230 – 21,527,321
Length 91
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 92.34
Mean single sequence MFE -22.80
Consensus MFE -18.45
Energy contribution -19.32
Covariance contribution 0.87
Combinations/Pair 1.10
Mean z-score -1.55
Structure conservation index 0.81
SVM decision value 0.04
SVM RNA-class probability 0.552694
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21527230 91 - 23771897
-----UGGAUUCUGGAUCCUGGAUUGUGAGUUCUGGUUUCCAGACUCCGACUUCGAAAAUUAAAAGCAAACAGCCAAAUAAGAGAUGUAAGCAUUU
-----.(((.((((((..(..((........))..)..)))))).))).................((..(((.((......).).)))..)).... ( -22.40)
>DroSec_CAF1 32612 91 - 1
-----UGGAUUCUGGAUCCUGGAUUGUGGGUUCUGGUUUCCAGACUACGACUUCGAAAAUUAAAAGCAAACAUCCAAAUAAGAAAUGUAAGCAUUU
-----(((((((((((..(..((........))..)..))))))...((....))................)))))......(((((....))))) ( -21.30)
>DroSim_CAF1 32985 96 - 1
GAUUCUGGAUUCUGGAUCCUGGAUUGUGGGUUCUGGUUUCCAGACUACGACUUCGAAAAUUAAAAGCAAACAUCCAAAUAAGAGAUGUAAGCAUUU
...((((((..(..((.(((.......))).))..)..))))))...((....))..........((..((((((......).)))))..)).... ( -25.50)
>DroYak_CAF1 7673 91 - 1
-----UGGAUUGUGGGUUCUUGGUUGUGGGUUCUGGUUUCCAGACUCCGACUUCGAAAAUUAAAAGCAAACAUCCAAAUAAGAGAUGUAAGCAUUU
-----...........(((..(((((.((((.((((...)))))))))))))..)))........((..((((((......).)))))..)).... ( -22.00)
>consensus
_____UGGAUUCUGGAUCCUGGAUUGUGGGUUCUGGUUUCCAGACUACGACUUCGAAAAUUAAAAGCAAACAUCCAAAUAAGAGAUGUAAGCAUUU
.....((((.((((((..(..((........))..)..)))))).))))................((..((((((......).)))))..)).... (-18.45 = -19.32 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:47 2006