Locus 817

Sequence ID 3L_DroMel_CAF1
Location 2,490,203 – 2,490,305
Length 102
Max. P 0.958438
window1257 window1258

overview

Window 7

Location 2,490,203 – 2,490,305
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 85.03
Mean single sequence MFE -47.52
Consensus MFE -40.75
Energy contribution -41.67
Covariance contribution 0.92
Combinations/Pair 1.19
Mean z-score -2.72
Structure conservation index 0.86
SVM decision value 1.49
SVM RNA-class probability 0.958438
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2490203 102 + 23771897
GACACAUGCGGUGAUUAUGCGCUGCCGGCCGUCAGGUCCACAGGAUCCUCCAUUCCGGUGGGAUGGAGUCUCCUUCUGGCCGCGGCCGGGGUCUUAAAGUCA
(((....((((((......))))))(((((((..((.(((.((((..(((((((((...)))))))))..))))..))))))))))))..........))). ( -50.20)
>DroSec_CAF1 113614 102 + 1
GACACAUGCGGUGAUUAUGCGCUGCCGGCCGUCAGGUCCACAGGAUCCUCCAUUCCGGUGGGAUGGAGUCUCCUCCUGGCCGCGGCCGGGGUCUUAAAGUCA
(((....((((((......))))))(((((((..((((...((((..(((((((((...)))))))))..))))...)))))))))))..........))). ( -49.90)
>DroSim_CAF1 108589 102 + 1
GACACAUGCGGUGAUUAUGCGCUGCCGGCCGUCAGGUCCACAGGAUCCUCCAUUCCAGUGGGAUGGAGUCUCCUCCUGGCCGCGGCCGGGGUCUUAAAGUCA
(((....((((((......))))))(((((((..((((...((((..(((((((((...)))))))))..))))...)))))))))))..........))). ( -49.90)
>DroEre_CAF1 113852 102 + 1
GACACAUGCGGUGAUUAUGCGCUGCCGGCCGCCGGGUCCACGGGAUCCUCCAUUCGGUUGGGAUGGAGUCUCCUUGUGGCCGCGGCCGGGGUCUUAAAGUCA
(((....((((((......))))))(((((((..((.((((((((..((((((((.....))))))))..))).))))))))))))))..........))). ( -53.20)
>DroYak_CAF1 111945 102 + 1
GACACAUGCGGUGAUUAUGCGCUGCCGGCCGUCGGAUCCACGGACUCCUCCAUUCCGGUGGAAUGGAUUAUCCUUGUGGCCACGGCCGGGGUCUUAAAGUCA
(((....((((((......))))))(((((((.((..(((((((....((((((((...))))))))...)))..)))))))))))))..........))). ( -44.70)
>DroAna_CAF1 94083 89 + 1
UGCACAUGCGGUGAAUAUGCGCUGCCGGCCGUCGACUCCCGGGGCGCCUCU-------------UGGGCACCCACCUGGCCACGGCCGGGGUCUUAAAGUCA
.((....((((((......))))))..))....((((....(((.(((...-------------..))).))).((((((....)))))).......)))). ( -37.20)
>consensus
GACACAUGCGGUGAUUAUGCGCUGCCGGCCGUCAGGUCCACAGGAUCCUCCAUUCCGGUGGGAUGGAGUCUCCUCCUGGCCGCGGCCGGGGUCUUAAAGUCA
(((....((((((......))))))(((((((..((((...((((..((((((((.....))))))))..))))...)))))))))))..........))). (-40.75 = -41.67 +   0.92)

alignment

Postscript

secondary structure

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dotplot

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Window 8

Location 2,490,203 – 2,490,305
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 85.03
Mean single sequence MFE -42.45
Consensus MFE -33.26
Energy contribution -33.67
Covariance contribution 0.41
Combinations/Pair 1.23
Mean z-score -2.16
Structure conservation index 0.78
SVM decision value 0.36
SVM RNA-class probability 0.703111
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2490203 102 - 23771897
UGACUUUAAGACCCCGGCCGCGGCCAGAAGGAGACUCCAUCCCACCGGAAUGGAGGAUCCUGUGGACCUGACGGCCGGCAGCGCAUAAUCACCGCAUGUGUC
.............(((((((((((((..((((..((((((((....)).))))))..)))).))).)).).)))))))..((((((.........)))))). ( -43.50)
>DroSec_CAF1 113614 102 - 1
UGACUUUAAGACCCCGGCCGCGGCCAGGAGGAGACUCCAUCCCACCGGAAUGGAGGAUCCUGUGGACCUGACGGCCGGCAGCGCAUAAUCACCGCAUGUGUC
.............(((((((((((((.(.(((..((((((((....)).))))))..)))).))).)).).)))))))..((((((.........)))))). ( -42.40)
>DroSim_CAF1 108589 102 - 1
UGACUUUAAGACCCCGGCCGCGGCCAGGAGGAGACUCCAUCCCACUGGAAUGGAGGAUCCUGUGGACCUGACGGCCGGCAGCGCAUAAUCACCGCAUGUGUC
.............(((((((((((((.(.(((..((((((((....)).))))))..)))).))).)).).)))))))..((((((.........)))))). ( -42.30)
>DroEre_CAF1 113852 102 - 1
UGACUUUAAGACCCCGGCCGCGGCCACAAGGAGACUCCAUCCCAACCGAAUGGAGGAUCCCGUGGACCCGGCGGCCGGCAGCGCAUAAUCACCGCAUGUGUC
.............((((((((((((((..(((..((((((.(.....).))))))..))).)))).))..))))))))..((((((.........)))))). ( -43.00)
>DroYak_CAF1 111945 102 - 1
UGACUUUAAGACCCCGGCCGUGGCCACAAGGAUAAUCCAUUCCACCGGAAUGGAGGAGUCCGUGGAUCCGACGGCCGGCAGCGCAUAAUCACCGCAUGUGUC
.............((((((((((((((..((((..((((((((...))))))))...))))))))..)).))))))))..((((((.........)))))). ( -42.30)
>DroAna_CAF1 94083 89 - 1
UGACUUUAAGACCCCGGCCGUGGCCAGGUGGGUGCCCA-------------AGAGGCGCCCCGGGAGUCGACGGCCGGCAGCGCAUAUUCACCGCAUGUGCA
.............((((((((((((..(.(((((((..-------------...))))))))..).))).))))))))..((((((.........)))))). ( -41.20)
>consensus
UGACUUUAAGACCCCGGCCGCGGCCAGAAGGAGACUCCAUCCCACCGGAAUGGAGGAUCCCGUGGACCCGACGGCCGGCAGCGCAUAAUCACCGCAUGUGUC
.............(((((((((((((.(.(((..((((((.(.....).))))))..)))).)))..))).)))))))..((((((.........)))))). (-33.26 = -33.67 +   0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:56 2006