Locus 8165

Sequence ID 3L_DroMel_CAF1
Location 21,512,563 – 21,512,683
Length 120
Max. P 0.703012
window13346

overview

Window 6

Location 21,512,563 – 21,512,683
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -29.13
Consensus MFE -26.53
Energy contribution -26.20
Covariance contribution -0.33
Combinations/Pair 1.09
Mean z-score -1.96
Structure conservation index 0.91
SVM decision value 0.36
SVM RNA-class probability 0.703012
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21512563 120 + 23771897
CCCCUAAUUAUAUACAAUGUAUGUAAUACGUCCUAAUAAGUGCUAUGUGCAUAUCCCGGUGCACUUGUCAAGUGUUGGCACACCGACUCAACCGGCCCGGUCAUUAAAAUAUACAUUUUU
...............(((((((((.....((.((((((..((.((.((((((......)))))).)).))..)))))).))((((..((....))..)))).......)))))))))... ( -27.10)
>DroSec_CAF1 17660 120 + 1
CCCCUAAUUAUAUACAAUGUACGUAGUAUGUCCUAAUAAGUGCUAUGUGCAUAUCCCGGUGCACUUGUCAAGUGUUGGCACACCGACUCAACCGGCCCGGUCAUUAAAAUAUACAUUUUU
........(((((...(((((((((((((..........)))))))))))))...((((.((..(((......(((((....))))).)))...))))))........)))))....... ( -30.00)
>DroSim_CAF1 17294 120 + 1
CCCCUAAUUAUAUACAAUGUAUGUAGUGUGUCCUAAUAAGUGCUAUGUGCAUAUCCCGGUGCACUUGUCAAGUGUUGGCACACCGACUCAACCGGCCCGGUCAUUAAAAUAUACAUUUUU
...............(((((((((.(((((.((.((((..((.((.((((((......)))))).)).))..))))))))))).((((..........))))......)))))))))... ( -30.30)
>consensus
CCCCUAAUUAUAUACAAUGUAUGUAGUAUGUCCUAAUAAGUGCUAUGUGCAUAUCCCGGUGCACUUGUCAAGUGUUGGCACACCGACUCAACCGGCCCGGUCAUUAAAAUAUACAUUUUU
........(((((...(((((((((((((..........)))))))))))))...((((.((..(((......(((((....))))).)))...))))))........)))))....... (-26.53 = -26.20 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:08 2006