| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,504,923 – 21,505,043 |
| Length | 120 |
| Max. P | 0.556243 |
| Location | 21,504,923 – 21,505,043 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.08 |
| Mean single sequence MFE | -28.67 |
| Consensus MFE | -27.34 |
| Energy contribution | -27.23 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.556243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21504923 120 + 23771897 AAUUUGGUUGUGGCCAUGAACUGGUUGGCGCAAAAUAAGCAAAGGUACAAAUUGAACGUUUAUGACCCAAUGAUACUUGAGGUGAGCUUUUCAAAAUGAAGCCAUUACCAAUGGCCUAAU ......((((.((((((....((((((((((.......)).......((..(((((.((((...((((((......))).)))))))..)))))..))..))))..)))))))))))))) ( -28.30) >DroSec_CAF1 10368 117 + 1 AAUUUGGUUGUGGCCAUGAACUGGUUGGCUCAAAAUAAGCAAAGGUACAAAUCGAACGUUUAUGACCCAAUGAUACUUGAGGUGAGCUUUUCAAAAUGAAGCCAUUACUAUU---CUAAU ....((((.((((((((....(((..(((((...((((((...(((....)))....)))))).((((((......))).))))))))..)))..)))..))))).))))..---..... ( -27.70) >DroSim_CAF1 10237 117 + 1 AAUUUGGUUGUGGCCAUGAACUGGUUGGCUCAAAAUAAGCAAAGGUACAAAUCGAACGUUUAUGACCCAAUGAUACUUGAGGUGAGCUUUUCAAAAUGAAGCCAUUACCAUU---CUAAU ....((((.((((((((....(((..(((((...((((((...(((....)))....)))))).((((((......))).))))))))..)))..)))..))))).))))..---..... ( -30.00) >consensus AAUUUGGUUGUGGCCAUGAACUGGUUGGCUCAAAAUAAGCAAAGGUACAAAUCGAACGUUUAUGACCCAAUGAUACUUGAGGUGAGCUUUUCAAAAUGAAGCCAUUACCAUU___CUAAU ....((((.((((((((....(((..(((((...((((((...(((....)))....)))))).((((((......))).))))))))..)))..)))..))))).)))).......... (-27.34 = -27.23 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:50 2006