Locus 8155

Sequence ID 3L_DroMel_CAF1
Location 21,497,281 – 21,497,372
Length 91
Max. P 0.947348
window13323

overview

Window 3

Location 21,497,281 – 21,497,372
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 97.80
Mean single sequence MFE -21.60
Consensus MFE -20.59
Energy contribution -20.37
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.47
Structure conservation index 0.95
SVM decision value 1.37
SVM RNA-class probability 0.947348
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21497281 91 - 23771897
AACUGGCUUAAUAAAUCCGGCCAAGAUGCUACAGUCGACACCGGCAACCACAAUAUAACUAAAUACCUGUGGGCAUGCCACUUCAAAUUUA
...((((.........((((....(((......)))....))))...(((((.(((......)))..)))))....))))........... ( -18.80)
>DroSec_CAF1 2628 91 - 1
AACUGGCUUAAUAAAUCCGGCCAAGAUGCUGCUGCCGACACCGGCAACCACAAUAUAACUAAAUACCUGUGGGCAUGCCACUUCAAAUUUA
...(((((..........))))).((.((((((((((....))))).(((((.(((......)))..)))))))).))....))....... ( -23.00)
>DroSim_CAF1 2491 91 - 1
AACUGGCUUAAUAAAUCCGGCCAAGAUGCUGCUGCCGACACCGGCAACCACAAUAUAACUAAAUACCUGUGGGCAUGCCACUUCAAAUUUA
...(((((..........))))).((.((((((((((....))))).(((((.(((......)))..)))))))).))....))....... ( -23.00)
>consensus
AACUGGCUUAAUAAAUCCGGCCAAGAUGCUGCUGCCGACACCGGCAACCACAAUAUAACUAAAUACCUGUGGGCAUGCCACUUCAAAUUUA
...(((((..........)))))..((((....((((....))))..(((((.(((......)))..)))))))))............... (-20.59 = -20.37 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:46 2006