Locus 8151

Sequence ID 3L_DroMel_CAF1
Location 21,488,750 – 21,488,857
Length 107
Max. P 0.999647
window13316 window13317

overview

Window 6

Location 21,488,750 – 21,488,857
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 97.94
Mean single sequence MFE -27.88
Consensus MFE -23.22
Energy contribution -23.02
Covariance contribution -0.20
Combinations/Pair 1.08
Mean z-score -1.77
Structure conservation index 0.83
SVM decision value 0.39
SVM RNA-class probability 0.717709
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21488750 107 + 23771897
CUUUCACAAAAAAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGCUAC
.....................(((...(((((.(((((((((.(((.(((....))).))).........))))))))).....((((....))))))))).))).. ( -26.30)
>DroSec_CAF1 10548 107 + 1
CUUUCACAAAAAAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGAGAUUUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGCUGC
......................(((.((((((.((((((((.((((......))))(((((.....))))))))))))).....((((....)))))))).)).))) ( -27.80)
>DroSim_CAF1 11943 107 + 1
CUUUCACAAAAAAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGCUGC
......................(((.((((((.(((((((((.(((.(((....))).))).........))))))))).....((((....)))))))).)).))) ( -26.60)
>DroEre_CAF1 10578 107 + 1
CUUUCACAAAAAAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGACGGUGAUGCCACCCAAGUUGC
......................((((((((((((((........))))....((((((((((...(((.....))))))))))))).((.....)))))).)))))) ( -27.90)
>DroYak_CAF1 12440 107 + 1
CUUUCACAAAAAAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGUUGC
......................((((((((((.(((((((((.(((.(((....))).))).........))))))))).....((((....)))))))).)))))) ( -30.80)
>consensus
CUUUCACAAAAAAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGCUGC
.....................(((...(((((.(((((((((.((..(((....)))..)).........))))))))).....((((....))))))))).))).. (-23.22 = -23.02 +  -0.20)

alignment

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secondary structure

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dotplot

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Window 7

Location 21,488,750 – 21,488,857
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 97.94
Mean single sequence MFE -29.87
Consensus MFE -29.30
Energy contribution -28.94
Covariance contribution -0.36
Combinations/Pair 1.09
Mean z-score -2.37
Structure conservation index 0.98
SVM decision value 3.83
SVM RNA-class probability 0.999647
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21488750 107 - 23771897
GUAGCUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUUUUUUGUGAAAG
((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..))))))))))((..((((....))))..)).. ( -28.80)
>DroSec_CAF1 10548 107 - 1
GCAGCUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAAAUCUCGAACACAAGUAAACCCAGUUGCUUUGUAAAAUUUUUUGUGAAAG
((((((.(((((((......)))......((((((((..............((((......))))))))))))..))))))))))((..((((....))))..)).. ( -30.83)
>DroSim_CAF1 11943 107 - 1
GCAGCUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUUUUUUGUGAAAG
((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..))))))))))((..((((....))))..)).. ( -30.80)
>DroEre_CAF1 10578 107 - 1
GCAACUUGGGUGGCAUCACCGUCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUUUUUUGUGAAAG
((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..))))))))))((..((((....))))..)).. ( -28.10)
>DroYak_CAF1 12440 107 - 1
GCAACUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUUUUUUGUGAAAG
((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..))))))))))((..((((....))))..)).. ( -30.80)
>consensus
GCAGCUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUUUUUUGUGAAAG
((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..))))))))))((..((((....))))..)).. (-29.30 = -28.94 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:37 2006