| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,478,168 – 21,478,269 |
| Length | 101 |
| Max. P | 0.677832 |
| Location | 21,478,168 – 21,478,269 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.99 |
| Mean single sequence MFE | -30.84 |
| Consensus MFE | -21.87 |
| Energy contribution | -21.35 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.677832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21478168 101 + 23771897 --------------UGGCGCAGUGCCUUUUGGAACUUUUCGUAUUCCACAUAAUGUUUAAGACGCAGCUCGUCCUCUUCGAUGAGUUGUCUCUGACGCAACAGCAACAGCCGUUG --------------.(((....(((....(((((.........))))).....(((...(((.((((((((((......)))))))))).)))...)))...)))...))).... ( -30.30) >DroVir_CAF1 6235 115 + 1 AUUACUGCUUACAUUGGCGCAGUGCCUUUUGAAACUUUUCGUAUUCCACAUAAUGCUUAAGGCGCAGCUCGUCCUCUUCAAUCAGCUGCCGUUGGCGCAGCAGCAGCAGUCGCUG ....(((((.......((((...(((((..(((....)))(((((......)))))..)))))((((((.((........)).)))))).....)))))))))((((....)))) ( -31.91) >DroPse_CAF1 6518 115 + 1 AAUAAUUCUUACAUUGGCGCAGAGAUUUUUGAAAUUUUUCGUAUUCCACAUAGUGUUUCAAACGCAGUUCGUCCUCUUCGAUGAGCUGUCUCUGGCGCAACAGCAACAGCCGCUG ................((((((((...((((((((.....((.....)).....)))))))).((((((((((......)))))))))))))).))))..((((.......)))) ( -33.00) >DroEre_CAF1 178 115 + 1 AGCAGAACAUACAUUGGCGCAGUGCCUUUUGAAACUUUUCAUAUUCCACAUAAUGUUUAAGCCGCAGCUCGUCCUCUUCGAUGAGUUGUCUCUGACGCAAGAGCAACAGCCGUUG ...........((.((((...(((.....((((....)))).....)))....((((......((((((((((......))))))))))((((......)))).)))))))).)) ( -27.10) >DroAna_CAF1 181 115 + 1 ACUUGAGCUUACAUUGGCGCAGUGCCUUCUGAAACUUUUCGUAUUCCACAUAAUGUUUUAGGCGCAACUCGUCCUCCUCGAUGAGUUGUCUUUGGCGCAACAAUAACAGCCGUUG ...((.(((......))).))(((((.((((((((.((..((.....))..)).)))))))).((((((((((......))))))))))....)))))................. ( -30.80) >DroPer_CAF1 2 105 + 1 ----------ACAUUGGCGCAGAGAUUUUUGAAAUUUUUCGUAUUCCACAUAGUGUUUCAAACGCAGUUCGUCCUCUUCGAUGAGCUGUCUCUGGCGUAACAGCAACAGCCGCUG ----------.((.((((.(((((...((((((((.....((.....)).....)))))))).((((((((((......)))))))))))))))((......))....)))).)) ( -31.90) >consensus A_UA___CUUACAUUGGCGCAGUGCCUUUUGAAACUUUUCGUAUUCCACAUAAUGUUUAAGACGCAGCUCGUCCUCUUCGAUGAGCUGUCUCUGGCGCAACAGCAACAGCCGCUG ................((((.(((.....((((....)))).....)))..............((((((((((......)))))))))).....))))..((((.......)))) (-21.87 = -21.35 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:26 2006