| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,455,723 – 21,455,825 |
| Length | 102 |
| Max. P | 0.779530 |
| Location | 21,455,723 – 21,455,825 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.87 |
| Mean single sequence MFE | -28.68 |
| Consensus MFE | -15.55 |
| Energy contribution | -18.13 |
| Covariance contribution | 2.59 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21455723 102 + 23771897 -----UAACGUAACCAAUA-A-GGGAUUCUGUUAUCCCUGGACAGGGCCAGAAUAGGUUGACUUAGACUUGCUCUA-GCUCUGUCGAGUUAAAGACAGCUUCAAUAAAGU -----((((..........-(-(((((......)))))).((((((((.(((.((((((......)))))).))).-))))))))..))))................... ( -31.90) >DroSec_CAF1 4346 102 + 1 -----UAACGUAACCAAUA-A-GGGAUUCUGUUAUCCCUGGACAGGGUCAGAAUAGGUUGACUUAGACUUGCUCUA-GCUCUGUCGAGUUUAAGACAGCUUCAAUAAAUU -----........((....-.-))((..(((((....((.(((((((..(((.((((((......)))))).))).-.))))))).)).....)))))..))........ ( -30.30) >DroSim_CAF1 4311 102 + 1 -----UAACGUAACCAAUA-A-GGGAUUCUGUUAUCCCUGGACAGGGCCAGAAUAGGUUGACUUAGACUUGCUCUA-GCUCUGUCGAGUUUAAGACAGCUUCAAUAAAGU -----........((....-.-))((..(((((....((.((((((((.(((.((((((......)))))).))).-)))))))).)).....)))))..))........ ( -31.60) >DroYak_CAF1 4242 103 + 1 -----UAACGUAACCUUUAAA-GGGAUUCUGUUAUCCCUAGACAGGGCCAGAAUAGGUUGACUUGGACUUGCUCUA-GCUCUGUCGAGCUUAAGACAGCUUCAAUAAAGU -----.........(((((.(-(((((......)))))).((((((((.(((.((((((......)))))).))).-))))))))(((((......)))))...))))). ( -34.80) >DroAna_CAF1 4116 103 + 1 -----UAACGUAACUAGUA-AUGGGAUUCUGUUGUUCGUGGACAGGGUCAGAAUAGUUUGAGUUACUCUAACCUAA-CCGCUGUUGCGUUUCAAACAGCUUCAAUAAAGU -----....((((((...(-((...(((((((((((....)))))...)))))).)))..))))))..........-..((((((........))))))........... ( -23.90) >DroPer_CAF1 4041 100 + 1 GCUGAUUUAGAAACA--AA-A-GGGAUG--GAUA----GAGACAGGGCCAAAAUAGGUUGACAUUGACUUUCCCUAGGCACUGUGUAAUUUUAGACAGCUUCAAUAAAAA ((((.(((((((.((--..-.-....))--....----.(.((((.(((.....(((((......)))))......))).)))).)..)))))))))))........... ( -19.60) >consensus _____UAACGUAACCAAUA_A_GGGAUUCUGUUAUCCCUGGACAGGGCCAGAAUAGGUUGACUUAGACUUGCUCUA_GCUCUGUCGAGUUUAAGACAGCUUCAAUAAAGU ........................((..(((((....((.((((((((..((.((((((......)))))).))...)))))))).)).....)))))..))........ (-15.55 = -18.13 + 2.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:14 2006