| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,444,608 – 21,444,709 |
| Length | 101 |
| Max. P | 0.746408 |
| Location | 21,444,608 – 21,444,709 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.55 |
| Mean single sequence MFE | -21.66 |
| Consensus MFE | -6.06 |
| Energy contribution | -7.90 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.28 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21444608 101 - 23771897 UA---A-------UAUCUCUCUUCAAGUCAUUAAAAGUUCUAUA-AAGCUAUGGAA-------GACUUCAGAAUACAAAUUUUGGUUUGGCUAAUUCAAA-AAUAAAUAAGCGGAAGCCA ..---.-------............(((((.......(((((((-....)))))))-------....(((((((....)))))))..)))))........-.........((....)).. ( -15.30) >DroSec_CAF1 3267 112 - 1 AAACAA-------UUUUUUUUUUCAAGUGAUUAAAAGUUCUAUA-AAGCUAUAGAACAGAACAGACAUCAGAAUACAAAUUUCGGUUUGGCUAAUUCAAAUGACAAAUAGGCGGAAGCCC ......-------.....(((.(((..(((......((((((((-....))))))))....(((((....(((.......))).)))))......)))..))).)))..(((....))). ( -24.40) >DroSim_CAF1 732 112 - 1 AAACAA-------UUUUUUUUUUCAAGUGAUUAAAAGUUCUAUA-AAGCUAUAGAACAGAACAGACAUCAGAAUACAAAUUUCGGUUUGGCUAAUUCAAAUGACAAAGAGGCGGAAGCUC ......-------...(((((.(((..(((......((((((((-....))))))))....(((((....(((.......))).)))))......)))..))).)))))(((....))). ( -24.20) >DroEre_CAF1 3327 95 - 1 UA---A-------UAUCUCUUUUUGAAUUAUUUAAAGUUCUAUA-GAGCUAUGGA-------AGACAUCAGAAUACACAUUUCUGCUUGGCUAGUUCAA-------AUAGGCGGAAGCAU ..---.-------.....((.(((((((((((((.(((((....-))))).))))-------...((.(((((.......)))))..))..))))))))-------).))((....)).. ( -22.70) >DroYak_CAF1 712 110 - 1 UA---ACGUUCCACAUCACUUGGAGGAGACUUUUCAACUCCAUAACAACUCGAAA-------AGACAUCAAAAUACAAUCUUCGGCAUUGCUAAUUCAAAUGAGAAAUAGGCGGAAGCCU ..---..........(((.(((((..((.((((((................))))-------))...........(((((....).))))))..))))).))).....((((....)))) ( -21.69) >consensus UA___A_______UAUCUCUUUUCAAGUGAUUAAAAGUUCUAUA_AAGCUAUAGAA______AGACAUCAGAAUACAAAUUUCGGUUUGGCUAAUUCAAAUGACAAAUAGGCGGAAGCCC ......................................((((((.....))))))...............((((.(((((....)))))....))))............(((....))). ( -6.06 = -7.90 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:06 2006