Locus 8126

Sequence ID 3L_DroMel_CAF1
Location 21,401,653 – 21,401,760
Length 107
Max. P 0.818233
window13279

overview

Window 9

Location 21,401,653 – 21,401,760
Length 107
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 78.22
Mean single sequence MFE -39.60
Consensus MFE -27.36
Energy contribution -27.17
Covariance contribution -0.19
Combinations/Pair 1.24
Mean z-score -1.49
Structure conservation index 0.69
SVM decision value 0.67
SVM RNA-class probability 0.818233
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21401653 107 + 23771897
GUGGAUCGGUAGCCUCAACCGCAUCCACACCCACACCCGCACCCGAACUCGGCUGCAGUCGCAGUAGGAGCUGGCGCUAGGUAGUCCAGUUCGGGUGUCUGUUUUAU
((((((((((.......)))).))))))....(((...(((((((((((.((((((((.((((((....))).)))))..)))))).))))))))))).)))..... ( -47.90)
>DroSec_CAF1 34401 95 + 1
GUGCAUCGGUAGCCUC------------ACCCACACCCGCACCCGAACUCGGCUGCAGUCGCAGUAGGAGCUGGCGCUAGGUAGUCCAGUUCGGGUGUCUGUUUUAU
(((....(((......------------))))))((..(((((((((((.((((((((.((((((....))).)))))..)))))).)))))))))))..))..... ( -36.70)
>DroSim_CAF1 34600 95 + 1
GUGGAUCGGUAGCCUC------------ACCCACACCCGCACCCGAACUCGGCUGCAGUCGCAGUAGGAGCUGGCGCUAGGUAGUCCAGUUCGGGUGUCUGUUUUAU
((((...((...))..------------..))))((..(((((((((((.((((((((.((((((....))).)))))..)))))).)))))))))))..))..... ( -38.10)
>DroEre_CAF1 35435 101 + 1
CUGGAUCGGUACCCUUGCCCGCACCCG------CACCCGCAACCGAACAUGGCUGCAGGCCCAGUAGGAGCUGGCGCUAGGUAGUCCAGUUCGGGUGUCUGUUUUAU
.......((((....)))).(((((((------(....))....((((.(((((((.((((((((....))))).)))..)))).)))))))))))))......... ( -38.40)
>DroYak_CAF1 35510 107 + 1
GUGGAUCGGUAACCUCACCCGCACCCGCACCCGCACCCGCACCCGGACAUGGCUGCAGCCGCAGUAGGAGCUGGCGCUAGGUAGUCCAGUUCGGGUGUCUGUUUUAU
((((...(((......))).((....))..))))((..((((((((((.(((((((((((.((((....))))).)))..)))).)))))))))))))..))..... ( -41.00)
>DroAna_CAF1 23662 83 + 1
------------------------CUGGACCCGGACCCGGACCGGGACCAGGUUGUGGUCGCAGCAUGAGCUGGCGCUAGGUAGCCCAGUUCGGGUGUCUGUUUUAU
------------------------((((.(((((.......))))).))))...(..(.(((....((((((((.(((....))))))))))).))).)..)..... ( -35.50)
>consensus
GUGGAUCGGUAGCCUC________CCG_ACCCACACCCGCACCCGAACUCGGCUGCAGUCGCAGUAGGAGCUGGCGCUAGGUAGUCCAGUUCGGGUGUCUGUUUUAU
................................((((((.............(((((....)))))..(((((((.(((....))))))))))))))))......... (-27.36 = -27.17 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:55 2006