| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,386,744 – 21,386,841 |
| Length | 97 |
| Max. P | 0.500000 |
| Location | 21,386,744 – 21,386,841 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 80.45 |
| Mean single sequence MFE | -35.52 |
| Consensus MFE | -20.38 |
| Energy contribution | -21.80 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21386744 97 - 23771897 UUGUCGCCCUUUUUGGCCAAGCAACCGGCGGCUACUUGGCCGCGCCCAUUUCGUGUCCAAGCUGCGCCCACGGCUUGCAUGCG-----AAAUUUCGAAAUAC ((((.(((......)))...)))).((((((((....))))))....(((((((((.(((((((......))))))).)))))-----))))..))...... ( -33.80) >DroVir_CAF1 6554 92 - 1 UUGUCGCGCGCUCUGCCCAAGCAACCGGAGGCUACUUGGCCGCGCCCUCUGUGUGUCCGAGCUGUGCCCCCAGCGUGCAUAUGAAAUG-UUUC--------- .....(((((((.(((....)))...((.((((((((((.(((((.....))))).))))).)).))).)))))))))..........-....--------- ( -33.90) >DroPse_CAF1 6159 100 - 1 UUGUCGCCCUCUCUGUCCAAGCAACCGGCGGCUACUUGGCCGCGCCCAUUUCGUGUCCAAGCUGUGCCCACGGCCUGCAUAUGAAAUG-AUGUGCGAUAUC- .((((((....................((((((....))))))...((((((((((.((.(((((....))))).)).))))))))))-....))))))..- ( -36.90) >DroGri_CAF1 6679 101 - 1 UUGUCGCGCACUCUUCCAAAGCAACCGGAGGCUACUUGGCCGCGCCCUCUUUGUGUCCGAGUGGUGCCCCCAGCGUGCAUAUGAAAUG-AUGUGCCACACAC .(((.((((((..(((....(((...((.((((((((((.((((.......)))).)))))))..))).))....)))....)))..)-.))))).)))... ( -31.30) >DroAna_CAF1 7646 100 - 1 UUGUCGCCCUUUUUGGCCAAGCAACCGGCGGCUACUUGGCCGCGCCCAUAUCGUGUCCAAGCUGCGCCCACGGCUUGCAUGCGAAAUG-AUGUGCGACACA- .((((.........(((((((...((...))...)))))))((((.(((.((((((.(((((((......))))))).)))))).)))-..))))))))..- ( -40.30) >DroPer_CAF1 6182 100 - 1 UUGUCGCCCUCUCUGUCCAAGCAACCGGCGGCUACUUGGCCGCGCCCAUUUCGUGUCCAAGCUGUGCCCACGGCCUGCAUAUGAAAUG-AUGUGCGAUAUC- .((((((....................((((((....))))))...((((((((((.((.(((((....))))).)).))))))))))-....))))))..- ( -36.90) >consensus UUGUCGCCCUCUCUGCCCAAGCAACCGGCGGCUACUUGGCCGCGCCCAUUUCGUGUCCAAGCUGUGCCCACGGCCUGCAUAUGAAAUG_AUGUGCGACAUA_ .((((((....................((((((....))))))......(((((((.((.((((......)))).)).)))))))........))))))... (-20.38 = -21.80 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:48 2006