Locus 8113

Sequence ID 3L_DroMel_CAF1
Location 21,346,646 – 21,346,737
Length 91
Max. P 0.524139
window13257

overview

Window 7

Location 21,346,646 – 21,346,737
Length 91
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 94.46
Mean single sequence MFE -22.74
Consensus MFE -19.02
Energy contribution -18.78
Covariance contribution -0.24
Combinations/Pair 1.06
Mean z-score -1.30
Structure conservation index 0.84
SVM decision value -0.02
SVM RNA-class probability 0.524139
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21346646 91 + 23771897
-------ACUCUCCGCCCACGCUGCCACUCAAUCUAUAAAUAUGCCAGACUUUGCAUAGCCGUAAAGUCAACAAAAGGCAUCCGUAGAAUGGAAUAGG
-------....(((((....))..........(((((....(((((.((((((((......)))))))).......)))))..)))))..)))..... ( -19.50)
>DroSec_CAF1 49417 91 + 1
-------ACUGUCCGCCCACGCUGCCACUCAAUCUAUAAAUAUGCCAGACUUUGCAUAGCCGUAAAGUCAACAAAAGGCAUCCGCAGAAUGGAAUGGG
-------.....(((.(((..((((......................((((((((......)))))))).......((...))))))..)))..))). ( -21.50)
>DroSim_CAF1 50650 91 + 1
-------ACUGUCCGCCCACGCUGCCACUCAAUCUAUAAAUAUGCCAGACUUUGCAUAGCCGUAAAGUCAACAAAAGGCAUCCGCAGAAUGGAAUGGG
-------.....(((.(((..((((......................((((((((......)))))))).......((...))))))..)))..))). ( -21.50)
>DroEre_CAF1 51520 91 + 1
-------ACUGUCCGCCCACGCUGCCACUCAAUCUAUAAAUAUGCCAGACUUUGCAUAGCCGUAAAGUCAACAAAAGGCAUCCGUAGAAUGGGAUGGG
-------.((((((((....)).......((.(((((....(((((.((((((((......)))))))).......)))))..))))).)))))))). ( -25.30)
>DroYak_CAF1 77086 98 + 1
UCCGCCCACUGUUCGCCCACGCUGCCACUCAAUCUAUAAAUAUGCCAGACUUUGCAUAGCCGUAAAGUCAACAAAAGGCAUCCGUAGAAUGGGAUGGG
....((((......((....)).....((((.(((((....(((((.((((((((......)))))))).......)))))..))))).)))).)))) ( -25.90)
>consensus
_______ACUGUCCGCCCACGCUGCCACUCAAUCUAUAAAUAUGCCAGACUUUGCAUAGCCGUAAAGUCAACAAAAGGCAUCCGUAGAAUGGAAUGGG
................(((..((((......................((((((((......)))))))).......((...))))))..)))...... (-19.02 = -18.78 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:34 2006