Locus 8112

Sequence ID 3L_DroMel_CAF1
Location 21,346,066 – 21,346,172
Length 106
Max. P 0.732807
window13256

overview

Window 6

Location 21,346,066 – 21,346,172
Length 106
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 68.57
Mean single sequence MFE -26.83
Consensus MFE -6.37
Energy contribution -6.87
Covariance contribution 0.50
Combinations/Pair 1.11
Mean z-score -2.25
Structure conservation index 0.24
SVM decision value 0.43
SVM RNA-class probability 0.732807
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21346066 106 + 23771897
AGUGCAAA-AUGGAAAAGUUUAUGCCCUCUCACAUGGCGCAUACGUAAUAAUUUCCAAUGGCACUUUUGUGGCCUUAGAGACACAAUUUACCUAAUGCCACACGAUC
(((((...-.((((((.((((((((((........)).)))))...)))..))))))...)))))..((((((.((((.............)))).))))))..... ( -29.22)
>DroPse_CAF1 65398 99 + 1
UGAAUAAACACACCAA----UAGGACGGUGCACGUGGCGAAUGCGUAAUAAAUUUCAU-G-CGACAGGAUGGCCUUAACGCAGCCAUUUGCUUAAUGCCC--GGGCA
................----..(..(((.(((...((((((((.((...........(-(-((..(((....)))...))))))))))))))...)))))--)..). ( -25.10)
>DroSec_CAF1 48829 106 + 1
AGUGCAAA-AUGGAAAAGUUUAUGCCCUCUCACAUGGCGCAUACGUAAUAAUUUCCAAUGGCACUUCUGUGGCCUUAGAGCCACAAUUUACCUAAUGCCACAAGAUC
(((((...-.((((((.((((((((((........)).)))))...)))..))))))...)))))((((((((.((((.............)))).))))).))).. ( -30.02)
>DroSim_CAF1 50060 106 + 1
AGUGCAAA-AUGGAAAAGUUUAUGCCCUCUCACAUGGCGCAUACGUAAUAAUUUCCAAUGGCACUUGUGUGGCCUUAGAGCCACAAUUUACCUAAUGCCACACGAUC
.((((...-.((((((.((((((((((........)).)))))...)))..))))))...))))(((((((((.((((.............)))).))))))))).. ( -33.82)
>DroEre_CAF1 50955 85 + 1
AGUACAAA-AUGAAAAAGUUU---------------------ACGUAAUAAUUUCCAAUGGCAUUUUUGUGGCCUUACAGCCACAAUUUACCUAAUGCCACCCGAGC
........-............---------------------..........(((...(((((((.(((((((......))))))).......)))))))...))). ( -17.70)
>DroPer_CAF1 69305 99 + 1
UGAAUAAACACACCAA----UAGGACGGUGCACGUGGCGAAUGCGUAAUAAAUUUCAU-G-CGACAGGAUGGCCUUAACGCAGCCAUUUGCUUAAUGCCC--GGGCA
................----..(..(((.(((...((((((((.((...........(-(-((..(((....)))...))))))))))))))...)))))--)..). ( -25.10)
>consensus
AGUACAAA_AUGGAAAAGUUUAUGCCCUCUCACAUGGCGCAUACGUAAUAAUUUCCAAUGGCACUUGUGUGGCCUUAGAGCCACAAUUUACCUAAUGCCACACGAUC
....................................................................(((((.((((.............)))).)))))...... ( -6.37 =  -6.87 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:33 2006