| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,278,913 – 21,279,033 |
| Length | 120 |
| Max. P | 0.691570 |
| Location | 21,278,913 – 21,279,033 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.56 |
| Mean single sequence MFE | -42.57 |
| Consensus MFE | -33.68 |
| Energy contribution | -34.62 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21278913 120 + 23771897 AAAUACUUCCCGGUGGCAGUUCCGAAAGAGCGAUUUCUCCUGGAUCGUCUUGCCCAUCUCCAUCGGUAGUCGCCAGCGACAGGUUAUGAUAAGCUCCAGAAACAGCCUGUUGCUGCAUGU ....(((..(((((((.((......((((.((((((.....))))))))))......))))))))).))).((.(((((((((((.((........)).....))))))))))))).... ( -39.00) >DroSec_CAF1 37155 120 + 1 AAAUACUUCCCGGUGGCAGUUCUGAAAGAGCUAUAGCUCCAGGAUCGGCUUGCCCAUCUCCAUCGGUAGUCGCCAGCGACAGGUUGUGAUAUGCUCCAGAAACAGCCUGUUGCUGCAUGU ....(((..(((((((..((((((...((((....)))))))))).((....)).....))))))).))).((.(((((((((((((..............))))))))))))))).... ( -45.34) >DroSim_CAF1 39418 120 + 1 AAAUACUUCCCGGUGGCAGUUCCGAAAGAGCGAUAGCUCCAGGAUCGGCUUGCCCAUUUCCAUCGGUAGUCGCCAGCGACAGGUUGUGAUAUGCUCCAGAAACAGCCUGUUGCUGCAUGU ...........((((((....((((..((((....))))..(((..((....))....))).))))..))))))(((((((((((((..............)))))))))))))...... ( -45.54) >DroEre_CAF1 38394 120 + 1 AAAUACUGCCCGGUGGCAGUUCUGCAAGAGUGAUUGCCCCGGGAUCCGCCUGCCCAUCUCCUCCGGUCGUCGCGAGCGACAAGGUGUGAUAAGCUCCAGAAACAGCCUGUUGCUGCAUGU ........(((((.(((((((((.....)).))))))))))))(((((((((((..........))).((((....)))).))))).))).(((..(((.......)))..)))...... ( -40.40) >consensus AAAUACUUCCCGGUGGCAGUUCCGAAAGAGCGAUAGCUCCAGGAUCGGCUUGCCCAUCUCCAUCGGUAGUCGCCAGCGACAGGUUGUGAUAAGCUCCAGAAACAGCCUGUUGCUGCAUGU .........(((((((.((........((((....))))((((.....)))).....))))))))).....((.(((((((((((((..............))))))))))))))).... (-33.68 = -34.62 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:56 2006