| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,270,702 – 21,270,822 |
| Length | 120 |
| Max. P | 0.723552 |
| Location | 21,270,702 – 21,270,822 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.53 |
| Mean single sequence MFE | -42.57 |
| Consensus MFE | -39.71 |
| Energy contribution | -39.77 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21270702 120 - 23771897 AUGCGAGCAUAGUCAGCGGGAAGAUUCUCCUUGGCAUCCCAAGGCGAAGUUCGGAAGGACUCUAAGCCGCGAUAUUUCUGGAACCUCUCGCGAGCGGGCACAUCCAAAGGAGUGUCUAUC .((((((.....(((((((..((((((.((((((....)))))).)))((((....)))))))...))))((....))))).....))))))...((((((.(((...)))))))))... ( -43.00) >DroSec_CAF1 28979 120 - 1 AUGCGAGCAUAGUCAGCAGGAAGAUUCUCCUUGGCAUCCCAAGGCGAAGUUCGAAAGGACUCUAAGCCGCGAUAUUUCUGGAACCUCUCGCGAGCGGGUACAUCCAAAGGAGUGUCGAUC ..(((.((.(((............(((.((((((....)))))).)))((((....)))).))).)))))((((((((((((....((((....))))....)))..))))))))).... ( -42.10) >DroSim_CAF1 31235 120 - 1 AUGCGAGCAUAGUCAGCAGGAAGAUUCUCCUUGGCAUCCCAAGGCGAAGUUCGGAAGGACUCUAAGCCGCGAUAUUUCUGGAACCUCUCGCGAGCGGGUACAUCCAAAGGAGUGUCUAUC ..(((.((.(((............(((.((((((....)))))).)))((((....)))).))).)))))((((((((((((....((((....))))....)))..))))))))).... ( -41.60) >DroEre_CAF1 30157 120 - 1 AUGCGAGCAUAGUCCGCGGGAAGAUUCUCCUUGGCAUCCCAAGGCGAUGUUCGGAAGGACUCCAAGCCGCGAUAUUUCUGGAACCUCUCGCGAGCGGGCACAUCCAAAGGAGUGUCAAUC .((((((.....(((((((......((.((((((....)))))).)).((((....))))......))))((....)).)))....))))))....(((((.(((...)))))))).... ( -43.60) >consensus AUGCGAGCAUAGUCAGCAGGAAGAUUCUCCUUGGCAUCCCAAGGCGAAGUUCGGAAGGACUCUAAGCCGCGAUAUUUCUGGAACCUCUCGCGAGCGGGCACAUCCAAAGGAGUGUCUAUC ..(((.((...(....).(((...(((.((((((....)))))).)))((((....)))))))..)))))((((((((((((....((((....))))....)))..))))))))).... (-39.71 = -39.77 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:45 2006