Locus 808

Sequence ID 3L_DroMel_CAF1
Location 2,443,101 – 2,443,196
Length 95
Max. P 0.930853
window1244

overview

Window 4

Location 2,443,101 – 2,443,196
Length 95
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 76.37
Mean single sequence MFE -30.09
Consensus MFE -19.93
Energy contribution -19.60
Covariance contribution -0.33
Combinations/Pair 1.19
Mean z-score -1.76
Structure conservation index 0.66
SVM decision value 1.21
SVM RNA-class probability 0.930853
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2443101 95 - 23771897
GGAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGAUGUAGCC------GAGAUGUCGAAGGGCGCGGAGUUGGCUUUGAAGCUGUAAUAGA--AGAAU-------------AUAUGU
......(((.(.....).)))((((.(((((((((....((------(....(((....))).))).))))))))).)))).........--.....-------------...... ( -29.90)
>DroVir_CAF1 69328 106 - 1
GAAUGUCCAGCGGCUUGGUAGGCUUAAAGGCCGACGUUGCC------GAAAUGUCAAAUGGCGCGGAGUUCGCUUUAAAGCUGCAGACAAAUUGAAUAAGUUUCGAGAUUA----U
...((((..((((((((((..((((...((((((((((...------..))))))....))).).))))..)))...))))))).))))..(((((.....))))).....----. ( -32.40)
>DroPse_CAF1 73857 97 - 1
GAAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGACGUGCCCGACGACGAGAUGUCAAAGGACGUGGAGUUGGCUUUAAAGCUGCAAAAGAGUGGAAU-------------------
.....(((((((((((.((.((((....)))).))..(((.(((..(...(((((....))))))..))))))....))))))).......))))..------------------- ( -31.31)
>DroWil_CAF1 81494 88 - 1
GUAUGUCCAGCGGCUUGGUGGGCUUAAAGGCCGAUGAGGCC------GAGAUGUCAAAGGGUGUGGAGUUGGCUUUGAAGCUGUAGAA-----AUAU-------------A----A
((((.(((((((((((.((.((((....)))).)).)))))------......((((((.............)))))).))))..)).-----))))-------------.----. ( -28.32)
>DroYak_CAF1 63810 91 - 1
GGAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGAGCUGGCC------GAGAUGUCGAAGGGCGCGGAGUUGGCUUUGAAGCUGCAAGAGA--AGAAU-------------A----C
((....)).((((((((((.((((((.....)))))).)))------.....(((....))).(((((....))))))))))))......--.....-------------.----. ( -33.80)
>DroAna_CAF1 53280 91 - 1
GGAUGUCCAGUGGCUUCGUGGGCUUGAAGGCGGACGUGGCC------GAGAUGUCAAAGGGCGCGGAGUUGGCUUUAAAGCUGUAGAGAA--AGAGU-------------A----G
.((((((...(((((.(((..(((....)))..))).))))------).))))))..(.(((..((((....))))...))).)......--.....-------------.----. ( -24.80)
>consensus
GGAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGACGUGGCC______GAGAUGUCAAAGGGCGCGGAGUUGGCUUUAAAGCUGCAAAAGA__AGAAU_____________A____U
.........((((((((((.(((((...(((.......)))...........(((....)))...))))).)))...)))))))................................ (-19.93 = -19.60 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:43 2006