Locus 8055

Sequence ID 3L_DroMel_CAF1
Location 21,229,474 – 21,229,594
Length 120
Max. P 0.547686
window13164

overview

Window 4

Location 21,229,474 – 21,229,594
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.06
Mean single sequence MFE -45.80
Consensus MFE -34.09
Energy contribution -36.15
Covariance contribution 2.06
Combinations/Pair 1.08
Mean z-score -1.46
Structure conservation index 0.74
SVM decision value 0.03
SVM RNA-class probability 0.547686
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21229474 120 + 23771897
CGCUGAUAAGACCUCUUUUGGUUUCAGCUAAUUGGUAUGGUGCUUUUGGCCCUGAUUUGGGUGGAGGUGGAUGCCCGUCUGGUGAGAGUCCGCCGGAUCCGGAGAUUGGUCGGAGCCAGU
.(((((...((((......))))))))).........((((...(((((((....(((((((...(((((((.(((....)).)...)))))))..)))))))....))))))))))).. ( -42.50)
>DroSim_CAF1 96586 120 + 1
CGCUGAUAAGACCUCUUUUGGUUUCAGCUAAUUGGCAUCGUGCUUUUGGCCCUGAUUUGGGUGGAGGUAGAUGCCCGUCUUGUGAGGGUCCGCCGGAUCCGGAGAUUGGUCGGCGCCAGU
.(((((...((((......)))))))))..(((((((((.(((((.(.((((......)))).)))))))))(((.(((((....((((((...)))))).))))).)))....)))))) ( -45.80)
>DroEre_CAF1 49070 114 + 1
GGCUGAUAAGACCUCU------UUCAGCUAAUUGGCCUUUUCUUGUUGGCCCUCAUUUGGGUGGAGGCUGAUGCCCGCCUGGUGAGGGUUCGCCGGAUCCGGAGAUUGGUCGGCGCCAGU
((((((.(((....))------))))))).((((((...........((((((((.(..(((((..((....)))))))..))))))))).(((((..(((.....)))))))))))))) ( -49.00)
>DroYak_CAF1 154016 120 + 1
GGCUGAUAAGACCUCUCUUGGUUUCAGCUAAUUGGCCUGGUGUUUUUGGCCCUGAUUUGGGUGGAGGUCGAUGCCCGUCUGGUGAGGGUUCGCCGGAUCAGAAGAUUGGUCGGCGCCACU
(((......(((((((((..(..((((......((((..........)))))))).)..)).)))))))((.((((.((....))))))))((((.(((((....))))))))))))... ( -45.90)
>consensus
CGCUGAUAAGACCUCUUUUGGUUUCAGCUAAUUGGCAUGGUGCUUUUGGCCCUGAUUUGGGUGGAGGUAGAUGCCCGUCUGGUGAGGGUCCGCCGGAUCCGGAGAUUGGUCGGCGCCAGU
.(((((...((((......)))))))))..((((((.........((.((((......)))).))(((((((..((((((((((......)))))))..)))..)))))))...)))))) (-34.09 = -36.15 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:03 2006