| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,226,636 – 21,226,795 |
| Length | 159 |
| Max. P | 0.946101 |
| Location | 21,226,636 – 21,226,756 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.33 |
| Mean single sequence MFE | -33.20 |
| Consensus MFE | -30.15 |
| Energy contribution | -30.90 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.867021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21226636 120 + 23771897 GCAGUUAUUAGCGACGCGAUCUGCUGCGCUCGAAAGUUAAAUUAAAACUGGUCAAAAAUCAUUUGACGAGGCCGAAAAGGAAGCUUUCGAUUUCAAUAGAGGAAGCUUCAGCUAACCAGU .......(((((((.((..((((.((...(((((((((.........((.((((((.....)))))).)).((.....)).)))))))))...)).))))....)).)).)))))..... ( -32.40) >DroSim_CAF1 93739 119 + 1 GCAGUUAAU-GCGACGCGAUCUGCUGCGCUCGAAAGUUAAAUUGAAACUGGUCAAAAAUCAUUUGACGAGGCCGAAAAGGAAGCUUUCGAUUUCAAUAGAGGAAGCUUCAGCUAACCAGU ((..(((((-.(((((((......)))).)))...))))).(((...((.((((((.....)))))).))..)))....(((((((((..(......)..))))))))).))........ ( -31.10) >DroEre_CAF1 46056 119 + 1 GCAGUUAAU-GCGACGCGAGCUGCUGCGUUCGAAAGUUAAGUUAAAACUGGCCAAAAAACAUUUAACCAGGCCGAAAAGGAAGCUUUCGAUGUUUGUAGAGGAAGCUUCAGCUAACCAGU (((.....)-))...(((((((.(((((.(((((((((.(((....)))((((................))))........)))))))))....)))))....)))))..))........ ( -30.89) >DroYak_CAF1 151214 119 + 1 GCAGUUAAU-GCGACGCGAUCUGCUGCGCUCGAAAGUUUAAUUAAAACUGGCCAAAAAACAUUUGGCCAGGCCGAAAAGGAAGCUUUCGAUUUCUACAGAGGAAGCUUCAGCUAACCAGU (((.....)-))((.((..((((..(...((((((((((........(((((((((.....))))))))).((.....))))))))))))...)..))))....)).))........... ( -38.40) >consensus GCAGUUAAU_GCGACGCGAUCUGCUGCGCUCGAAAGUUAAAUUAAAACUGGCCAAAAAACAUUUGACCAGGCCGAAAAGGAAGCUUUCGAUUUCAAUAGAGGAAGCUUCAGCUAACCAGU (((((.....((...)).....)))))..(((((((((.........(((((((((.....))))))))).((.....)).)))))))))..........((.(((....)))..))... (-30.15 = -30.90 + 0.75)
| Location | 21,226,676 – 21,226,795 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.86 |
| Mean single sequence MFE | -34.65 |
| Consensus MFE | -30.26 |
| Energy contribution | -31.32 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21226676 119 + 23771897 AUUAAAACUGGUCAAAAAUCAUUUGACGAGGCCGAAAAGGAAGCUUUCGAUUUCAAUAGAGGAAGCUUCAGCUAACCAGUGGGCUCUCUG-GAUUCGUUCUCGGAACAUCAGACGUGGAA .......(((((((((.....))))))(((..((((...(((((((((..(......)..)))))))))......((((........)))-).))))..))).......)))........ ( -34.10) >DroSim_CAF1 93778 120 + 1 AUUGAAACUGGUCAAAAAUCAUUUGACGAGGCCGAAAAGGAAGCUUUCGAUUUCAAUAGAGGAAGCUUCAGCUAACCAGUGGGCUCUCUGGGAUUCGUUCUCGGAACAUCAGACGAGGAA .......(((((((((.....))))))(((.((......(((((((((..(......)..))))))))).(((....))))).)))(((((((.....)))))))....)))........ ( -35.10) >DroEre_CAF1 46095 120 + 1 GUUAAAACUGGCCAAAAAACAUUUAACCAGGCCGAAAAGGAAGCUUUCGAUGUUUGUAGAGGAAGCUUCAGCUAACCAGUGAUCUCUCUGGAAUUCGUUCUCGGAAUAUUAGACGAGGAA .........((((................))))(((...(((((((((..((....))..)))))))))......((((.(....).))))..))).((((((..........)))))). ( -31.79) >DroYak_CAF1 151253 120 + 1 AUUAAAACUGGCCAAAAAACAUUUGGCCAGGCCGAAAAGGAAGCUUUCGAUUUCUACAGAGGAAGCUUCAGCUAACCAGUGAGCUCUCUGGGAUUCGUUCUCGAGAUAUUAGAUGAGGAA .......(((((((((.....))))))))).((......(((((((((............)))))))))..((((((((.(....).))))..((((....))))...))))....)).. ( -37.60) >consensus AUUAAAACUGGCCAAAAAACAUUUGACCAGGCCGAAAAGGAAGCUUUCGAUUUCAAUAGAGGAAGCUUCAGCUAACCAGUGAGCUCUCUGGGAUUCGUUCUCGGAACAUCAGACGAGGAA .......(((((((((.....)))))))))..((((...(((((((((............)))))))))......((((.(....).))))..))))((((((..........)))))). (-30.26 = -31.32 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:02 2006