Locus 805

Sequence ID 3L_DroMel_CAF1
Location 2,417,737 – 2,417,835
Length 98
Max. P 0.975348
window1239

overview

Window 9

Location 2,417,737 – 2,417,835
Length 98
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 93.81
Mean single sequence MFE -30.28
Consensus MFE -26.43
Energy contribution -26.65
Covariance contribution 0.22
Combinations/Pair 1.07
Mean z-score -2.23
Structure conservation index 0.87
SVM decision value 1.75
SVM RNA-class probability 0.975348
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2417737 98 + 23771897
CGAGUGCUCAGGUGCAAUUUAAUUGCUGCCAAGAUUUGCUUU-UUUUACGCGCCAAGUGCGGUGCGGGAAAAGUGAAUUAGAAAAGCAAACACACGGG-G
.(..((((..((((((((...))))).)))..((((..((((-((...((((((......)))))).))))))..)))).....))))..).......-. ( -31.20)
>DroSec_CAF1 50932 96 + 1
CGAGUGCUCAGGUGCAAUUUAAUUGCUGCCAAGAUUUGCUUU--UUUAGGCGCCAAGUGCGGUGCGGGAAAAGUGAAUUAGAAAAGCAAACACACGG--G
.(..((((..((((((((...))))).)))..((((..((((--(((..(((((......))))).)))))))..)))).....))))..)......--. ( -30.00)
>DroSim_CAF1 44864 96 + 1
CGAGUGCUCAGGUGCAAUUUAAUUGCUGCCAAGAUUUGCUUU--UUUACGCGCCAAGUGCGGUGCGGGAAAAGUGAAUUAGAAAAGCAAACACACGG--A
.(..((((..((((((((...))))).)))..((((..((((--(((.((((((......)))))))))))))..)))).....))))..)......--. ( -31.70)
>DroEre_CAF1 44575 98 + 1
CGAGUGCUCAGGUGCAAUUUAAUUGCUGCCAAGAUUUGCUUUUUUUUACGCGCCAAGUGCGGUGCGGAAAAAGUGAAUUAGAAAAGCAAACACACGG--G
.(..((((..((((((((...))))).)))..((((..(((((((...((((((......)))))))))))))..)))).....))))..)......--. ( -30.70)
>DroYak_CAF1 45638 97 + 1
CGAGUGCUCAGGUGCAAUUUAAUUGCUGCCAAGAUUUGCUUU-UUUUACGCGCCAAGUGCGGUGCGGAAAAAGUGAAUUAGAAAAGCAAACACACGG--G
.(..((((..((((((((...))))).)))..((((..((((-(((..((((((......)))))))))))))..)))).....))))..)......--. ( -31.10)
>DroAna_CAF1 38657 97 + 1
CGAGUGCUCAGGUGCAAUUUAAUUGCUGCCAAGAUUUGCUU---UUUACGCGCCAAGUGCGCCGUGGAAAAAGUGAAUUAGAAAAGCAAGCAUUAGUGGG
..((((((..((((((((...))))).)))..((((..(((---(((((((((.....))).))))..)))))..)))).........))))))...... ( -27.00)
>consensus
CGAGUGCUCAGGUGCAAUUUAAUUGCUGCCAAGAUUUGCUUU__UUUACGCGCCAAGUGCGGUGCGGAAAAAGUGAAUUAGAAAAGCAAACACACGG__G
.(..((((..((((((((...))))).)))..((((..((((......((((((......))))))...))))..)))).....))))..)......... (-26.43 = -26.65 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:38 2006