Locus 8043

Sequence ID 3L_DroMel_CAF1
Location 21,214,181 – 21,214,301
Length 120
Max. P 0.568980
window13141

overview

Window 1

Location 21,214,181 – 21,214,301
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.83
Mean single sequence MFE -30.43
Consensus MFE -24.15
Energy contribution -23.15
Covariance contribution -1.00
Combinations/Pair 1.21
Mean z-score -1.47
Structure conservation index 0.79
SVM decision value 0.07
SVM RNA-class probability 0.568980
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21214181 120 + 23771897
UGUCCGCUCUCUUAAUCUUCUGUUGAGUGACUUCUUAUCUUUGAGCAACUCUCAACACGUUUUCUCUUCGGUCUUUUGGUCUUAUCACCUAGAAGGUUUCCAUGGGGGAGCAGACGACGU
.(((.((((((((((((((((((((((.(....((((....))))...).)))))).............(..(....)..).........))))))).....))))))))).)))..... ( -33.10)
>DroSim_CAF1 81245 120 + 1
UGUCCGCUCUCUUAAUCUUCUGUUGAGUGACUUCUUAUCUUUGAGCAACUCUCAGCACGUUUUCUCUUCGGAUUUUUGGUCUUAUCACCUAGAAGGUUUCCAUGGGGGAGCAGACGACGU
.(((.(((((((((((((((((.(((..((((....((((..(((.(((.........)))..)))...))))....))))...)))..)))))))).....))))))))).)))..... ( -34.30)
>DroEre_CAF1 33847 99 + 1
U--------------------GUUGAGUGAGUUCUUAUCUUUGAGUAACUCUCAGCACGUU-UCUCUUCGCUCAUUUGGUCUUAUCGCCUAGACGGUUUCCAUGGGGGAGCAGGCGAUGU
(--------------------(((((..(((((((((....)))).)))))))))))....-....................((((((((.....((((((....)))))))))))))). ( -29.00)
>DroYak_CAF1 140542 99 + 1
U--------------------GUUGAGUGAAUUCUUAUCAUUGAGCAACUCUUAACACGUU-UCUCUUCGGUCUUCUGCUCUUAUCGCCUAGAAGGUUUCCAUGGGGGAGCAGGCGACGU
(--------------------((((((.(....((((....))))...).)))))))((..-......))(((.((((((((.....((((...((...)).)))))))))))).))).. ( -25.30)
>consensus
U____________________GUUGAGUGACUUCUUAUCUUUGAGCAACUCUCAACACGUU_UCUCUUCGGUCUUUUGGUCUUAUCACCUAGAAGGUUUCCAUGGGGGAGCAGACGACGU
.....................((((((.(....((((....))))...).))))))(((((.(((.......((((((((......))).)))))((((((....))))))))).))))) (-24.15 = -23.15 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:40 2006