Locus 8041

Sequence ID 3L_DroMel_CAF1
Location 21,213,022 – 21,213,124
Length 102
Max. P 0.838912
window13138

overview

Window 8

Location 21,213,022 – 21,213,124
Length 102
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 83.06
Mean single sequence MFE -24.45
Consensus MFE -16.28
Energy contribution -17.00
Covariance contribution 0.72
Combinations/Pair 1.23
Mean z-score -2.15
Structure conservation index 0.67
SVM decision value 0.74
SVM RNA-class probability 0.838912
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21213022 102 - 23771897
UAGCACUCCU-UUGUAUAAUUUAAAUACAUAUGUGCACAAGGAUGCAGCUCAAUGGCACAUCCCACCUGCCAUCGA--UUUUGG-----UUGAAGAAUCUUCCCUUAUUA
..(((.((((-(((((((.............)))))).))))))))......((((((.........)))))).((--((((..-----....))))))........... ( -21.52)
>DroSec_CAF1 33358 102 - 1
UAGCACUCCU-UUGCUUAAUUUAAAUACAUAUGUGCACAAGGAUGCAGUUCCGUGGCACGUCCCACCUGCCAUCGA--UUUUGG-----UUGGGGAAUCUUCCCUUAUUA
..(((.((((-((((...................))).))))))))...((.((((((.(.....).)))))).))--...(((-----(.(((((....))))).)))) ( -26.61)
>DroSim_CAF1 80089 101 - 1
UAGCACUCCU-UUGCAUAAUUUAAAUACAUAUG-GCACAAGGAUGCAGCUCCAUGGCACGUCCCACCUGCCAUCGA--UUUUGG-----UUGGGGAAUCUUCCCUUAUUA
..(((.((((-(((((((...........))).-))).))))))))...((.((((((.(.....).)))))).))--...(((-----(.(((((....))))).)))) ( -25.80)
>DroEre_CAF1 32693 99 - 1
UAGCACUCCUUUUGCAUAAUUUAAAU----AUGUUCUCAAGGAUGCAACUUAAUGGCACAUCUCACCUGCCAUCGA--UUUUGG-----UUGGGAACUUUUUCCUUAUUA
..(((.(((((..(((((.......)----))))....))))))))...(..((((((.........))))))..)--...(((-----(.(((((....))))).)))) ( -21.80)
>DroYak_CAF1 139658 104 - 1
UAGCUCUACUUUUGCAUAAUUUAUAU----AUGUGCACAAGGAUGCAACUCGGUGGCAC--CUCACCUGCCAUCGGACUUUUCGAACUUUUGGGAACUUUUCCCCUAUUA
..((....(((.((((((........----.)))))).)))...))...(((((((((.--......)))))))))...............((((.....))))...... ( -26.50)
>consensus
UAGCACUCCU_UUGCAUAAUUUAAAUACAUAUGUGCACAAGGAUGCAGCUCAAUGGCACAUCCCACCUGCCAUCGA__UUUUGG_____UUGGGGAAUCUUCCCUUAUUA
..(((.((((..((((((.............))))))..)))))))...((.((((((.........)))))).))...............(((((....)))))..... (-16.28 = -17.00 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:37 2006