Locus 8010

Sequence ID 3L_DroMel_CAF1
Location 21,124,361 – 21,124,481
Length 120
Max. P 0.932830
window13087

overview

Window 7

Location 21,124,361 – 21,124,481
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.50
Mean single sequence MFE -35.08
Consensus MFE -31.70
Energy contribution -31.94
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.50
Structure conservation index 0.90
SVM decision value 1.22
SVM RNA-class probability 0.932830
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21124361 120 - 23771897
CCCAUUUCCUAGCCAUCUUCAGUCAGCAACCGCAUUUCGUGCAUCAUAACAUCGCUGGCAAUUAUUCGGCGAGUUGCUGGCUCUCAUUAGCAUGUAUGGAACGUCUGGAUUGCACUCAGU
...........((.(((...((((((((((.((((...)))).........(((((((.......))))))))))))))))).....(((.((((.....)))))))))).))....... ( -32.40)
>DroSec_CAF1 175055 120 - 1
CCCAUUUCCCAGCCAUCUUCAGUCGGCAACCGCAUUUCGUGCACCAUAACAUCGCUGGCAAUUAUUCGGCGAGUUGCUGGCUCUCAUUAGCAUGUAUGGAAUGUCUGGAUUGCACUCAGU
........((((((..(....)..)))....((((((((((((.((((((.(((((((.......))))))))))).))(((......))).)))))))))))).)))............ ( -33.70)
>DroSim_CAF1 86765 120 - 1
CCCAUUUCCCAGCCAUCUUCAGUCGGCAACCGCAUUUCGUGCACCAUAACAUCGCUGGCAAUUAUUCGGCGAGUUGCUGGCUCUCAUUAGCAUGUAUGGAAUGUCUGGAUUGCACUCAGU
........((((((..(....)..)))....((((((((((((.((((((.(((((((.......))))))))))).))(((......))).)))))))))))).)))............ ( -33.70)
>DroEre_CAF1 97526 120 - 1
CCCAUUUCCCAGCAGUCUUCAGUCGGCAACCGCAUUUCGUGCAUCAUAGCAUCGCUGGCAAUUAUUCGGCGAGUAGCUGGCUCUCAUUAGCAUGUAUGGAAUGUCUGGAUUGCACUCAGU
...........((((((..(((..(....).(((((((((((((..((((.(((((((.......)))))))...))))(((......)))))))))))))))))))))))))....... ( -37.90)
>DroYak_CAF1 68485 120 - 1
CCCAUAAACCAGCAGUCUUCAGUCGGCAACCGCAUUUCGUGCAUCAUAACAUCGCUGGCAAUUAUUCGGCGAGUUGCUGGUUCUCAUUAGCAUGUAUGGAAUGUCUGGAUUGCACUCAGU
...........((((((..(((..(....).(((((((((((((...(((.(((((((.......))))))))))((((((....))))))))))))))))))))))))))))....... ( -37.70)
>consensus
CCCAUUUCCCAGCCAUCUUCAGUCGGCAACCGCAUUUCGUGCAUCAUAACAUCGCUGGCAAUUAUUCGGCGAGUUGCUGGCUCUCAUUAGCAUGUAUGGAAUGUCUGGAUUGCACUCAGU
.........................((((((((((((((((((....(((.(((((((.......))))))))))(((((......))))).))))))))))))..)).))))....... (-31.70 = -31.94 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:49 2006