Locus 801

Sequence ID 3L_DroMel_CAF1
Location 2,404,181 – 2,404,272
Length 91
Max. P 0.580562
window1233

overview

Window 3

Location 2,404,181 – 2,404,272
Length 91
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 80.00
Mean single sequence MFE -18.55
Consensus MFE -9.75
Energy contribution -9.17
Covariance contribution -0.58
Combinations/Pair 1.29
Mean z-score -2.03
Structure conservation index 0.53
SVM decision value 0.09
SVM RNA-class probability 0.580562
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2404181 91 - 23771897
UGGCGACGGGAGAAUUUCGUAAUUAAGCGAAGC-------------AGAAAAAAUCACCAGAGUGAGAUUUAUUAAGCGUAAGCAAGAAAACAAAAACGCAUAA
..(((.........((((((......)))))).-------------...(((..((((....))))..))).....((....)).............))).... ( -15.10)
>DroSec_CAF1 31886 91 - 1
UGGCGACGGAAGAAUUCCGUAAUUAAGCGAAGC-------------AGAAAAAAUCACCAGCGUGAGAUUUAUUAAGCGUAAGCAAGAAAACAAAAACGCAUAA
.....(((((.....)))))......(((....-------------...(((..((((....))))..))).....((....)).............))).... ( -17.00)
>DroSim_CAF1 31459 91 - 1
AGGCGACUGGAGAAUUCCGUAAUUAAGCGAAGC-------------AGAAAAAAUCACCAGCGUGAGAUUUAUUAAGCGUAAGCAAGAAAACAAAAACGCAUAA
..(((.((((.......(((......)))....-------------.((.....)).))))(....).........((....)).............))).... ( -14.70)
>DroEre_CAF1 31053 91 - 1
UGGCGACAGGAAGAUUCCGUAAUUAAGCGGAGC-------------AGAAAAACUCACAAGAGUGAGAUUUAUUAAGCGUAAGCAAGAAAACAAAAACGCAUAA
..(((.......(.((((((......)))))))-------------.......(((((....))))).........((....)).............))).... ( -21.20)
>DroYak_CAF1 31728 91 - 1
UGGCGACAGGAAGAUUUCGCAAUUAAGCGAAGC-------------AGAAAAACUCACAAGAGUGAGAUUUAUUAAGCGUAAGCAAGAAAACCAAAACGCAUAA
..(((...((..(.((((((......)))))))-------------.......(((((....))))).........((....)).......))....))).... ( -21.30)
>DroAna_CAF1 26893 103 - 1
UUUGGCCCGGAAAAUUCCGCAAUUAAGAGCAGUAGGUGGAGCAACCAAACAAACUCUGAAGAAAGAGAUUUAUGGGGCGAAGCCGAAGGAACA-AAACGAAUGA
((((..(((((....)))((........))....(((...((..(((......((((......)))).....))).))...)))...))..))-))........ ( -22.00)
>consensus
UGGCGACAGGAAAAUUCCGUAAUUAAGCGAAGC_____________AGAAAAAAUCACAAGAGUGAGAUUUAUUAAGCGUAAGCAAGAAAACAAAAACGCAUAA
..(((......(((((.(((......))).........................((((....))))))))).....((....)).............))).... ( -9.75 =  -9.17 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:32 2006