Locus 8001

Sequence ID 3L_DroMel_CAF1
Location 21,120,161 – 21,120,281
Length 120
Max. P 0.609715
window13065

overview

Window 5

Location 21,120,161 – 21,120,281
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.00
Mean single sequence MFE -39.86
Consensus MFE -32.36
Energy contribution -32.04
Covariance contribution -0.32
Combinations/Pair 1.19
Mean z-score -1.56
Structure conservation index 0.81
SVM decision value 0.15
SVM RNA-class probability 0.609715
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21120161 120 + 23771897
ACUCUUGGCAACUUGCGAUGAAGUGGGCGCUGUAGGUUUCACCUCAUCAGCGGCCACUGGCGACGUAGCGCUUAUGUCAUCUGAAAAAUAAGUUAAGACUUAAGCUGGAGGAGGCUUUGA
.(((((.((.((((((.....(((((.(((((.(((.....)))...))))).))))).)))).)).))(((((.(((..((........))....))).)))))...)))))....... ( -41.10)
>DroSec_CAF1 170810 120 + 1
ACGCUUGGCAACUUCUGAUGGAGUGGGCGCUGUGGGCUUCACCUUAUCAGCGGCUACUGGCGACGUGGCGCUUAUGUCAUCUGAGAAAUAAGUUAAGACCUAAGUUGGAGGAGGCUUUGA
...(..(((..((((..((....(((((((((.(((.....)))...)))))(((((.(....))))))((((((.((......)).)))))).....)))).))..))))..)))..). ( -38.60)
>DroSim_CAF1 82519 120 + 1
ACGCUUGGCAACUUCUGAUGGAGUGGGCGCUGUGGGUUUCACCUUAUCAGCGGCCACUGGCGACGUGGCGCUUAUGUCAUCUGAAAAAUGAGUUAAGACUUAAGUUUGAGGAGGCUUUGA
...(..(((..((((.((((..((((((((((.(((.....)))...)))).(((((.(....))))))))))))..))))..(((..(((((....)))))..)))))))..)))..). ( -42.00)
>DroEre_CAF1 93316 120 + 1
ACGCUUGACAACUUCCGAUGGAGUGGGCGCUGUGGGCUUCACCUUAUCAGCGGCCACUGGCGACGUGGCGCUUAUGUCAUCUGGAAAAUAAGUAAAGAAAUUUGUUGGAGAAGGCUGGGA
..((((..((((((((((((..((((((((((.(((.....)))...)))).(((((.(....))))))))))))..)))).)))).......(((....)))))))....))))..... ( -42.60)
>DroYak_CAF1 64216 106 + 1
ACGCUUGACAACUUCCGAUGGAGUGGGCGCUGUGGGUUUCGCCUUAUCAGCGGCCACUGGCGACGUCGCGCUUAUGUCAUCUGGAAAAUAAUUUAAAAAAUAGGUA--------------
............((((((((((((((.(((((.(((.....)))...))))).))))).(((....))).......))))).))))....................-------------- ( -35.00)
>consensus
ACGCUUGGCAACUUCCGAUGGAGUGGGCGCUGUGGGUUUCACCUUAUCAGCGGCCACUGGCGACGUGGCGCUUAUGUCAUCUGAAAAAUAAGUUAAGACAUAAGUUGGAGGAGGCUUUGA
...((((((...(((.((((((((((.(((((.(((.....)))...))))).)))))((((......))))....))))).)))......))))))....................... (-32.36 = -32.04 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:27 2006