Locus 7996

Sequence ID 3L_DroMel_CAF1
Location 21,116,910 – 21,117,030
Length 120
Max. P 0.854606
window13051

overview

Window 1

Location 21,116,910 – 21,117,030
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.67
Mean single sequence MFE -23.28
Consensus MFE -22.90
Energy contribution -23.30
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.37
Structure conservation index 0.98
SVM decision value 0.80
SVM RNA-class probability 0.854606
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21116910 120 - 23771897
UGUGUGGGCUUGUGUAUUUAAAUUAAUUACAAAAAUAGUUCAGUUGUAAGAGCAGAAUCGUAUUAAUAAUAGUAAUUAGAAUUUAGUUGAGCGGAAACGAAAUAAGGAUACAAAGUCGCC
......(((((.(((((((...((((((((.......((((........)))).......(((.....)))))))))))......(((...((....)).)))..))))))))))))... ( -21.10)
>DroSec_CAF1 167507 120 - 1
UGUGUGGGUUUGUGUGUUUAAAUUAAUUACAAAAAUAGUUCAGUUGUAAGAGCAGAAUCGUAUUAAUAAUAGUAAUUAGAAUUUAGUUGAGCGGAAACGAAAUAAGGAUACAAAGUCGCC
...((((.(((((((.((((..((((((((.......((((........)))).......(((.....)))))))))))............((....))...)))).))))))).)))). ( -24.90)
>DroSim_CAF1 79214 120 - 1
UGUGUGGGUUUGUGUGUUUAAAUUAAUUACAAAAAUAGUUCAGUUGUAAGAGCAGAAUCGUAUUAAUAAUAGUAAUUAGAAUUUAGUUGAGCGGAAACGAAAUAAGGAUACAAAGUCGCC
...((((.(((((((.((((..((((((((.......((((........)))).......(((.....)))))))))))............((....))...)))).))))))).)))). ( -24.90)
>DroEre_CAF1 90029 120 - 1
UGUGUGGGUUUGUGUGUUUAAAUUAAUUACAAAAAUAGUUCAGUUGUAAGAGCAGAAUCGUAUUAAUAAUAGUAAUUAGAAUUCAGUUGAGCGGAAACGAAAUAAGGAUACAAAGUCGCC
...((((.(((((((.((((..((((((.........((((........)))).(((((.(((((....)))))....).)))))))))).((....))...)))).))))))).)))). ( -25.20)
>DroYak_CAF1 60909 120 - 1
UGUGUGGGUUUGUGUGUUUAAAUUAAUUACAAAAAUAGUUCAGUUGUAAGAGCAGAAUCGUAUUAAUAAUAGUAAUUAGAAUUUAGUUGAGCGGAAACGAAAUAAGGAUACAAAGUAGCC
...((.(.(((((((.((((..((((((((.......((((........)))).......(((.....)))))))))))............((....))...)))).))))))).).)). ( -20.30)
>consensus
UGUGUGGGUUUGUGUGUUUAAAUUAAUUACAAAAAUAGUUCAGUUGUAAGAGCAGAAUCGUAUUAAUAAUAGUAAUUAGAAUUUAGUUGAGCGGAAACGAAAUAAGGAUACAAAGUCGCC
...((((.(((((((.((((..((((((((.......((((........)))).......(((.....)))))))))))............((....))...)))).))))))).)))). (-22.90 = -23.30 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:13 2006