Locus 7992

Sequence ID 3L_DroMel_CAF1
Location 21,115,177 – 21,115,297
Length 120
Max. P 0.500000
window13043

overview

Window 3

Location 21,115,177 – 21,115,297
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.92
Mean single sequence MFE -43.20
Consensus MFE -39.88
Energy contribution -40.20
Covariance contribution 0.32
Combinations/Pair 1.05
Mean z-score -1.13
Structure conservation index 0.92
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21115177 120 - 23771897
GUGGUGGCUCUGAAGCGAGGCAAAUGGACCCACAGAGGGACUUUGCAAAGGCUUGGGACUGCUACUGCUCAAUGGAGAGCUACUAGGCGAAUUGGCACCCGAAUUGCAACUUUGGCUUUG
(..((((((((.((((...(((((.(..(((.....))).))))))....)))).)))..)))))..).......(((((((....((((.((((...)))).)))).....))))))). ( -41.10)
>DroSec_CAF1 165777 120 - 1
GUGGUGGCUCUGUAGUGAGGCAAAUGGACCCACAGAGGGACUUUGCAAAGGCUUGGGACUGCUACUGCUCAAUGGAGAGCUACUAGGCGAAUUGGCACCCGAAUUGCCACUUUGGCUUUG
.((((((((((.((.(((((((((.(..(((.....))).))))))...(((........)))....)))).)).))))))))))(.((((.(((((.......))))).)))).).... ( -43.90)
>DroSim_CAF1 77486 120 - 1
GUGGUGGCUCUGCAGUGAGGCAAAUGGACCCACAGAGGGACUUUGCAAAGGCUUAGGACUGCUACUGCUCAAUGGAGAGCUACUAGGCGAAUUGGCACCCGAAUUGCCACUUUGGCUUUG
.((((((((((.((.(((((((((.(..(((.....))).))))))...(((........)))....)))).)).))))))))))(.((((.(((((.......))))).)))).).... ( -45.60)
>DroEre_CAF1 88302 120 - 1
GUGGUGGCUCUGCAGCGAGGCAAAUGGACCCACAGAGGGACUUUGCAAAGGCUUGGGGCUGCUACUGCUCAGUGGAGAGCUGCUAGGCGAAUUGGCACCCGAAUUGCCACUUUGGCUUUG
((((..((((((.(((...(((((.(..(((.....))).))))))....)))))))))..)))).((((......)))).(((((((((.((((...)))).)))))....)))).... ( -45.00)
>DroYak_CAF1 59155 120 - 1
GUGGUGGCUCUGCAGCGAGGCAAAUGGACCCACAGAGGGACUUUGCAAAGGCUUGGGACUGCUACUGCUCAAUGGCGAGCUACUAGGCGAAUUGGCACCCGAAUUGCCACUUUGGCUUUG
.(((((((((.((...((((((((.(..(((.....))).))))))...(((........)))....)))....)))))))))))(.((((.(((((.......))))).)))).).... ( -40.40)
>consensus
GUGGUGGCUCUGCAGCGAGGCAAAUGGACCCACAGAGGGACUUUGCAAAGGCUUGGGACUGCUACUGCUCAAUGGAGAGCUACUAGGCGAAUUGGCACCCGAAUUGCCACUUUGGCUUUG
.((((((((((.((..((((((((.(..(((.....))).))))))...(((........)))....)))..)).))))))))))(.((((.(((((.......))))).)))).).... (-39.88 = -40.20 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:05 2006