Locus 7988

Sequence ID 3L_DroMel_CAF1
Location 21,112,639 – 21,112,759
Length 120
Max. P 0.709566
window13038

overview

Window 8

Location 21,112,639 – 21,112,759
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.72
Mean single sequence MFE -39.17
Consensus MFE -34.72
Energy contribution -36.10
Covariance contribution 1.38
Combinations/Pair 1.03
Mean z-score -1.66
Structure conservation index 0.89
SVM decision value 0.37
SVM RNA-class probability 0.709566
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21112639 120 + 23771897
CAAAAGUUCGACCAGGUCAAACAGGAGGGUCUACUGCUACCUUCAGCCCUUAAAAACACGAAUGGCAAUGGAGUGGGCUUGGACGAGGCCGACAAUAUUGGGUUGAGGGAGCGACCCACC
.....(((.(((...))).))).((.(((((....(((.((((((((((.......((....))..((((..((.(((((.....))))).))..)))))))))))))))))))))).)) ( -43.20)
>DroSec_CAF1 163245 120 + 1
ACAAAGUUCGACCAGGUCAAACAGGAGGGUCUACUGCUACCUUCAGCCCUUAAAAACACGAAUGGCAAUGGAGUGGGCAUGGACGAAGCCGACAAUAUUGGGUUGAGGGAGCGGCCCACC
.....(((.(((...))).))).((.(((((....(((.((((((((((.......((....))..((((..((.(((.........))).))..)))))))))))))))))))))).)) ( -39.90)
>DroSim_CAF1 74692 120 + 1
ACAAAGUUCGACCAGGUCAAACAGGAGGGUCUACUGCUACCUUCAGCCCUUAAAAACACGAAUGGCAAUGGAGUGGGCAUGGACGAAGCCGACAAUAUUGGGUUGAGGGAGCGGCCCACC
.....(((.(((...))).))).((.(((((....(((.((((((((((.......((....))..((((..((.(((.........))).))..)))))))))))))))))))))).)) ( -39.90)
>DroEre_CAF1 85776 120 + 1
CAAAAGUUCGACCAGGUCAAACAGGAGGGCCUACUACUACCUUCAGCCCUUAAAAACACCAAUGGCAAUGGAGUUGGCUUGGACGAGGCCGACAAUAUUGGUUUGAGAGAGCGACCCACC
..............((((.....(((((...........))))).((.(((..((((.((...))(((((..((((((((.....))))))))..)))))))))..))).)))))).... ( -33.70)
>consensus
AAAAAGUUCGACCAGGUCAAACAGGAGGGUCUACUGCUACCUUCAGCCCUUAAAAACACGAAUGGCAAUGGAGUGGGCAUGGACGAAGCCGACAAUAUUGGGUUGAGGGAGCGACCCACC
.....(((.(((...))).))).((.(((((....(((.((((((((((.......((....))..((((..((.(((((.....))))).))..)))))))))))))))))))))).)) (-34.72 = -36.10 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:59 2006