Locus 7979

Sequence ID 3L_DroMel_CAF1
Location 21,107,197 – 21,107,316
Length 119
Max. P 0.621296
window13027

overview

Window 7

Location 21,107,197 – 21,107,316
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.80
Mean single sequence MFE -44.44
Consensus MFE -35.06
Energy contribution -34.26
Covariance contribution -0.80
Combinations/Pair 1.18
Mean z-score -1.54
Structure conservation index 0.79
SVM decision value 0.18
SVM RNA-class probability 0.621296
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21107197 119 + 23771897
UGGAAGGGGUGGCCAUGAUUCAUGAACGCCUGCGAAUCAUUGGCGUGGAAAUGGGCGACCAACCCUUCGUCUCUGAAGAUGGUAACCUCAUCCUG-GUGGCCAAUGGAGAGAUCUACAAU
..((((((...((((((((((............)))))).)))).......(((....))).))))))((((((..(..((((.(((.......)-)).)))).)..))))))....... ( -41.20)
>DroSec_CAF1 157828 120 + 1
CGGAAGGAGUGGCCAUGGUUCAUGAACGCCUGCGAAUCGUUGGCGUGGAAAUGGGCGACCAGCCCUUCGUCUCUGAGGAUGGUAACCUCAUCCUGGGUGGCCAACAGAGAGAUCUACAAC
..(((((..(((...(.((((((..(((((.(((...))).)))))....)))))).))))..))))).(((((((((((((.....)))))))((....))..)))))).......... ( -44.10)
>DroSim_CAF1 65469 119 + 1
CUGAAGGAGUGGCCAUGGUUCAUGAACGCCUGCGAAUCGUUGGCGUGGAAAUGGGCGACCAGCCUUUCGUCUCUGAGGAUGGUAACCUCAUCCUG-GUGGCCAACGGAGAGAUCUACAAC
..(((((.((.(((....(((....(((((.(((...))).))))).)))...))).))...))))).((((((..(..((((.(((.......)-)).)))).)..))))))....... ( -41.30)
>DroEre_CAF1 80581 119 + 1
CGGACGGAGUGGCCAUGGUUCAUGAACGCCUGCGAAUUGUGGGCGUGGAAAUGGGCGAUCAGCCCUUCGUCUCUGAUGAUGGCAACCUCAUCCUG-GUGGCCAACGGAGAGAUCUACAAC
.((((((((.(((.((.((((((..(((((..(.....)..)))))....)))))).))..))))))))(((((..((.((((.(((.......)-)).)))).)).))))))))..... ( -47.70)
>DroYak_CAF1 52393 119 + 1
CGGAAGGAGUGGCCAUGGUUCAUGAACGCCUGCGAAUUGUGGGCGUGGAAAUGGGCGAUCAGCCAUUCGUCUCUGAGGAUGGCAACCUCAUCCUG-GUGGCCAACGGAGAAAUCUACAAC
.(((..(((((((.((.((((((..(((((..(.....)..)))))....)))))).))..))))))).((((((....((((.(((.......)-)).)))).))))))..)))..... ( -47.90)
>consensus
CGGAAGGAGUGGCCAUGGUUCAUGAACGCCUGCGAAUCGUUGGCGUGGAAAUGGGCGACCAGCCCUUCGUCUCUGAGGAUGGUAACCUCAUCCUG_GUGGCCAACGGAGAGAUCUACAAC
((((.((.((.(((....(((....(((((..((...))..))))).)))...))).))...)).))))((((((....((((.(((.......).)).)))).)))))).......... (-35.06 = -34.26 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:47 2006