Locus 7957

Sequence ID 3L_DroMel_CAF1
Location 21,091,325 – 21,091,445
Length 120
Max. P 0.846069
window12980

overview

Window 0

Location 21,091,325 – 21,091,445
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.17
Mean single sequence MFE -39.30
Consensus MFE -29.88
Energy contribution -31.08
Covariance contribution 1.20
Combinations/Pair 1.14
Mean z-score -2.01
Structure conservation index 0.76
SVM decision value 0.77
SVM RNA-class probability 0.846069
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21091325 120 - 23771897
AAAUAAACUAAGCAGCUGGGCAGACAUAGCCAGCGUGGUUGUUGUAGCCGGUGUUGUUGCGACCAUAUCGAUGAUGGCUCAACCUUGCCAAGUAGUUGGUGGCAUUAGUUGUUUUGUAGU
......((.((((((((((((.......((((((((((((((..((((....))))..))))))))........((((........))))....)))))).)).)))))))))).))... ( -39.10)
>DroSec_CAF1 141504 109 - 1
AAAUAAACUAAGCAGCUGGGCAGACAUAGCCAGCGUGGUUGUUGUAGCC-----------GACCAUAUCGAUGAUGGCUCAACCUUGCCAAGUAGUUGGUGGCAUUAGUUGGUUUGUAGU
......((.((.(((((((((.......((((((.((((.((((.((((-----------(..(((....))).)))))))))...))))....)))))).)).))))))).)).))... ( -33.80)
>DroSim_CAF1 48550 120 - 1
AAAUAAACUAAGCAGCUGGGCAGACAUAGCCAGCGUGGUUGUUGUAGCCGCUAUUGUUGCGACCAUAUCGAUGAUGGCUCAACCUUGCCAAGUAGUUGGUGGCAUUAGUUGGUUUGUAGU
..(((((((((((((((((.(.......))))))(((((((...)))))))...)))(((.((((.....((..((((........)))).))...)))).)))....)))))))))... ( -37.40)
>DroEre_CAF1 63358 120 - 1
AAAUAAACUAAGCAGCUGGCCAGACAUGGCCGGCGUGGUUGUUGUAGCUGGUGUUGUUGUUACCAUAUCGACGAGGGCUCAACAUUGCCAAGUAGUUGGUGGCGUUAGUUGGUUGGUAGU
......(((((.((((((((..((((..((((((............))))))..))))(((((((.....((...(((........)))..))...))))))))))))))).)))))... ( -43.40)
>DroYak_CAF1 35515 120 - 1
AAAUAAGCUAGGCAGCUGGCCAGACAUGGCCAGCGUGGUUGUUGUAGCUGGUGUUGUUGUUACCAUAUCGAUGAUGGCUCAACCUUGCCAAGUAGUUGGUGGCAUUAGUUGGGUUGUAGU
.....((((((((.((((((((....))))))))...)))....)))))((((.......)))).........(..(((((((..(((((.........)))))...)))))))..)... ( -42.80)
>consensus
AAAUAAACUAAGCAGCUGGGCAGACAUAGCCAGCGUGGUUGUUGUAGCCGGUGUUGUUGCGACCAUAUCGAUGAUGGCUCAACCUUGCCAAGUAGUUGGUGGCAUUAGUUGGUUUGUAGU
.....((((((((.(((((..........)))))((((((((..((((....))))..))))))))((((((..((((........))))....)))))).)).)))))).......... (-29.88 = -31.08 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:00 2006