| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,084,492 – 21,084,588 |
| Length | 96 |
| Max. P | 0.538452 |
| Location | 21,084,492 – 21,084,588 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 71.91 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -15.30 |
| Energy contribution | -15.42 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538452 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21084492 96 + 23771897 AUAGACA-UAUGUUAGCUGC--GACUGCUUAA-CAGGUUUUACUUAUUAGUA---GUAUUAUUAUUUAUUCUGCCG-CCAGCGGCUAGCUUUGGUUAAAUAUAA------- ...(((.-...(((((((((--.((((((...-.((......))....))))---))..............((...-.)))))))))))....)))........------- ( -21.80) >DroSec_CAF1 139773 105 + 1 AUGGACGCUAGCGUAGCUGCACUGACGCUCAAUCAGGUUCUAUUCAUUAAUCUCUGGAUUAUUAUAUAUGUCGCCGACUAGCGGCUUGCUUGGGUCACGUAUUCC------ ((((((.(.((((.((((((..(((.......)))(((..(((....(((((....)))))......)))..))).....)))))))))).).))).))).....------ ( -26.60) >DroSim_CAF1 45922 108 + 1 AUAGACA-UAUGUUAGCUGCGCGACUGCUCAA-CAGGUUUUACUUAUUAGUAUUAUUAUUAUUAUUUAUUCUGCCG-CCAGCGGCUAGCUUUGGUUAAAUAUUACUUUUUC ...(((.-...((((((((((((.(((.....-)))((..((((....))))..))..................))-)..)))))))))....)))............... ( -23.00) >consensus AUAGACA_UAUGUUAGCUGC_CGACUGCUCAA_CAGGUUUUACUUAUUAGUAU__GUAUUAUUAUUUAUUCUGCCG_CCAGCGGCUAGCUUUGGUUAAAUAUUAC______ ...(((.....(((((((((......(......).(((.........(((((....)))))...........))).....)))))))))....)))............... (-15.30 = -15.42 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:59 2006