Locus 7937

Sequence ID 3L_DroMel_CAF1
Location 21,069,208 – 21,069,328
Length 120
Max. P 0.931438
window12943

overview

Window 3

Location 21,069,208 – 21,069,328
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.00
Mean single sequence MFE -36.90
Consensus MFE -34.54
Energy contribution -33.82
Covariance contribution -0.72
Combinations/Pair 1.11
Mean z-score -1.42
Structure conservation index 0.94
SVM decision value 1.21
SVM RNA-class probability 0.931438
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21069208 120 - 23771897
GUUCGACGGGCUUACAGGCGCAUGGUUCUGCUGCACCAUCCCGAUAAGCGGAAAGCCAAGGGCGAGGAAGUCAUCCAGGACGAUGAUUACUUCACAUGCAUAACCAAAGCUUACGAGAUA
.((((..((((((...((.(((((.(((((((.(........)...))))))).(((...)))((((.(((((((......))))))).)))).)))))....)).)))))).))))... ( -35.90)
>DroSec_CAF1 124548 120 - 1
AUUCGACGGGCUUACAGGCGCAUGGUCCUGCUGCAUCAUCCCGAUAAGCGGAAAGCCAAGGGCGAGGAAGUCAUUCAGGACGACGACUACUUCACAUGCAUAACCAAAGCUUACGAGAUA
.((((..((((((...((.(((((((((((((..(((.....))).)))((....)).)))))((((.((((..((.....)).)))).)))).)))))....)).)))))).))))... ( -35.00)
>DroSim_CAF1 30788 120 - 1
AUUCGACGGGCUUACAGGCGCAUGGUCCUGCUGCACCAUCCCGAUAAGCGGAAAGCCAAGGGCGAGGAAGUCAUCCAGGACGACGACUACUUCACAUGCAUAACCAAAGCUUACGAGAUA
.((((..((((((...((.((((((((((...((....((((.....).)))..))..)))))((((.((((.((......)).)))).)))).)))))....)).)))))).))))... ( -34.70)
>DroEre_CAF1 47151 120 - 1
AUUCGACGGGCUUAUAGACGCAUGGUCCUGCUGCAUCAUCCCGAUAAGCGGAAAGCCAAGGGCGAGGAAGUCAUCCAGGACGACGACUACUUCACAUGCAUAACCAAAGCCUACGAGAUA
.((((..((((((......(((((((((((((..(((.....))).)))((....)).)))))((((.((((.((......)).)))).)))).))))).......)))))).))))... ( -38.72)
>DroYak_CAF1 17573 120 - 1
AUUCGACGGGCUUAUAGACGCAUGGUCCUGCUGCAUCAUCCCGAUAAGCGGAAAGCCAAGGGCGAGGAAGUCAUCCAGGACGACGACUACUUCACAUGCAUAACUAAAGCCUACGAGAUA
.((((..((((((.(((..(((((((((((((..(((.....))).)))((....)).)))))((((.((((.((......)).)))).)))).)))))....))))))))).))))... ( -40.20)
>consensus
AUUCGACGGGCUUACAGGCGCAUGGUCCUGCUGCAUCAUCCCGAUAAGCGGAAAGCCAAGGGCGAGGAAGUCAUCCAGGACGACGACUACUUCACAUGCAUAACCAAAGCUUACGAGAUA
.((((..((((((......((((((((((...((....((((.....).)))..))..)))))((((.((((.((......)).)))).)))).))))).......)))))).))))... (-34.54 = -33.82 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:23 2006