Locus 7927

Sequence ID 3L_DroMel_CAF1
Location 21,063,712 – 21,063,831
Length 119
Max. P 0.613545
window12926

overview

Window 6

Location 21,063,712 – 21,063,831
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.61
Mean single sequence MFE -36.78
Consensus MFE -27.64
Energy contribution -27.52
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -1.91
Structure conservation index 0.75
SVM decision value 0.16
SVM RNA-class probability 0.613545
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21063712 119 + 23771897
GCUAACAAGAUGCUCGCUUGCAUUAAACAAUUGUUGGCUUGUUGUUGCUGUUUGCUCAGCUCAGCCCAAGGCGGCCCAUUAAAACGCUUAGCAAGCA-GCAAGUGCCGUGACCUUUUUCC
(((((((((((((......)))))......))))))))..((..((((((((((((.(((...(((...)))(...........)))).))))))))-))))..)).............. ( -37.60)
>DroSec_CAF1 118632 119 + 1
GCUAACAAGGUGCUCGCUUGCAUUAAACAAUUGUUGGCUUGUUGUUGCUGUUUGCUCAGCUCAGCCCAAGGCGGCCCAUUAAAAAGCUUAGCAAGCA-GCAAGUGCCGUGACCUUUUUCC
(((((((((((((......)))))......))))))))..((..((((((((((((.((((..(((......))).........)))).))))))))-))))..)).............. ( -37.50)
>DroSim_CAF1 24879 119 + 1
GCUAACAAGGUGCUCGCUUGCAUUAAACAAUUGUUGGCUUGUUGUUGCUGUUUGCUCAGCUCAGCCCAAGGCGGCCCAUUAAAAAGCUUAGCAAGCA-GCAAGUGCCGUGACCUUUUUCC
(((((((((((((......)))))......))))))))..((..((((((((((((.((((..(((......))).........)))).))))))))-))))..)).............. ( -37.50)
>DroEre_CAF1 41511 114 + 1
GCUAACAAGGUGCUCGCUUGCAUUAAACCAUUGUUGGUUUGUUGUUGCUGUUUGCUC-----AGCCCAAGGCGGCCCAUUAAAAAGCUUAGCAAGCA-GCAAGUGCCGUGACCUUUUUCC
.....((.((..((.....(((.(((((((....))))))).)))(((((((((((.-----(((((.....))...........))).))))))))-)))))..)).)).......... ( -36.60)
>DroYak_CAF1 11934 111 + 1
GCUAACAAGGUGCUCGCUUGCA----ACAAUUGUUGGUUUUUUGUUGCUGUUUGUUC-----AGCCCAAGGCGGCCCAUUAAAAAGCUUAGCAAGCAAGCAAGUGCCGUGACCUUUUUCC
.....((.((..((.((((((.----....((((((((((((((..(((((((....-----......)))))))....)))))))).)))))))))))).))..)).)).......... ( -34.70)
>consensus
GCUAACAAGGUGCUCGCUUGCAUUAAACAAUUGUUGGCUUGUUGUUGCUGUUUGCUCAGCUCAGCCCAAGGCGGCCCAUUAAAAAGCUUAGCAAGCA_GCAAGUGCCGUGACCUUUUUCC
(((((((((((((......)))))......))))))))......((((((((((((.......(((...)))(((..........))).)))))))).)))).................. (-27.64 = -27.52 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:05 2006