| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,061,487 – 21,061,601 |
| Length | 114 |
| Max. P | 0.565720 |
| Location | 21,061,487 – 21,061,601 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.34 |
| Mean single sequence MFE | -29.54 |
| Consensus MFE | -26.36 |
| Energy contribution | -26.76 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565720 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21061487 114 - 23771897 UUUUUUGGCGGCGAUUGUGCAAUCGCAGCUCUGGAACUAGCCAAUAAAUCAAAAUGCCAUUCUCAAGACUCUGGUGGCUGCUGCAAGUGCCACAUGCGGCAUUAAAAAC------AACAA (((.(((((.((((((....))))))((........)).))))).)))....((((((..((....)).....(((((.((.....)))))))....))))))......------..... ( -29.30) >DroSec_CAF1 116447 117 - 1 ---UUUGGCGGCGAUUAUGCAAUCGCAGGUCUGGAACUAGCCAAUAAAUCAAAAUGCCAUUCUCAAGACUCUGGUGGCUGCUGCAAGUGCCACAUGCGGCAUUAAAAACAGCAACAACAA ---.(((((.((((((....)))))).(((.....))).)))))...........((((((...........))))))(((((..((((((......)))))).....)))))....... ( -31.20) >DroSim_CAF1 22614 117 - 1 ---UUUGGCGGCGAUUAUGCAAUCGCAGGUCUGGAACUAGCCAAUAAAUCAAAAUGCCAUUCUCAAGACUCUGGUGGCUGCUGCAAGUGCCACAUGCGGCAUUAAAAACAGCAACAACAA ---.(((((.((((((....)))))).(((.....))).)))))...........((((((...........))))))(((((..((((((......)))))).....)))))....... ( -31.20) >DroEre_CAF1 39351 114 - 1 ---UUUGGCGGCGAUUAUGCAAUCGAAGCUCUGGAACUAGCCAAUAAAUCAAAAUGCCAUUCUCAAGACUGUGGUGGCUGCUGCAAGUGCCACAUGCGGCAUUAAAAACA---ACAACAA ---.((((((((((((..((.......))..(((......)))...)))).....((((((..((....)).)))))).))))).((((((......)))))).....))---)...... ( -27.90) >DroYak_CAF1 9857 111 - 1 ---UUUGGCGGCGAUUAUGCAAUCGAAGCUGUGGAACUAGCCAAUAAAUCAAAAUGCCAUUCUCAAGACUGUGGUGGCUGCUGCAAGUGCCACAUGCGGCAUUAAAAACA---A---CAA ---.((((((((((((....))))..((((.(((......)))............(((((((....))..)))))))))))))).((((((......)))))).....))---)---... ( -28.10) >consensus ___UUUGGCGGCGAUUAUGCAAUCGCAGCUCUGGAACUAGCCAAUAAAUCAAAAUGCCAUUCUCAAGACUCUGGUGGCUGCUGCAAGUGCCACAUGCGGCAUUAAAAACA___ACAACAA ....(((((.((((((....))))))((........)).)))))........((((((..((....)).....(((((.((.....)))))))....))))))................. (-26.36 = -26.76 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:02 2006