Locus 7922

Sequence ID 3L_DroMel_CAF1
Location 21,059,564 – 21,059,681
Length 117
Max. P 0.790538
window12919

overview

Window 9

Location 21,059,564 – 21,059,681
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.17
Mean single sequence MFE -34.73
Consensus MFE -30.22
Energy contribution -30.86
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.41
Structure conservation index 0.87
SVM decision value 0.59
SVM RNA-class probability 0.790538
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21059564 117 + 23771897
AAACAAAUCGCUGGCGAUUUUUCCCCUGCCUUUGCGAGCGGGAAAGUAUAGAAAGCUGCUCAAUGGGAAUCAAUAAAUUUGCUCAGGC---GGCAGUGGCUGCCACUUAAAGCCUGAUAG
....((((((....))))))(((((..((....))((((((..............))))))...))))).............((((((---...(((((...)))))....))))))... ( -34.24)
>DroSec_CAF1 114568 115 + 1
AAACAAAUCGCUGGCGAUU-UUCCCCUGCCAGUGCGAGCGGGAAAGUAUAGAAAGCUGCUCAAUGAGAAUCAAUAAAUUUGCUCAGGC---GGCAGUGGCUGCCACUUA-AGCCUGAUAG
...(((((((((((((...-......)))))))).((((((..............))))))...............))))).((((((---...(((((...)))))..-.))))))... ( -35.84)
>DroSim_CAF1 20835 116 + 1
AAACAAAUCGCUGGCGAUU-UUCCCCUGCCAGUGCGAGCGGGAAAGUAUAGAAAGCUGCUCAAUGAGAAUCAAUAAAUUUGCUCAGGC---GGCAGUGGCUGCCACUUAAAGCCUGAUAG
...(((((((((((((...-......)))))))).((((((..............))))))...............))))).((((((---...(((((...)))))....))))))... ( -35.14)
>DroEre_CAF1 37096 117 + 1
AAACAAAUCGCUGGCGAUUUUUCCCCUGACAGUGCGAGCGGGAAAGUAUAGAAAGCUGCUCAAUGAGAAUCAAUAAAUUUGCUCAGGC---GGCAGUGGCUGCCUCUUAAAGCCUGAUAA
....((((((....)))))).........(((.((((((((..............))))))..(((((..(((.....)))....(((---(((....)))))))))))..))))).... ( -31.34)
>DroYak_CAF1 7966 119 + 1
AAACAAAUCGCUGGCGAUU-UUCCCCUGCCAACGCGAGCGGGAAAGUAUAGAAAGCUGCUCAAUGAGAAUCAAUAAAUUUGCUCAGGCGGCGGCAGUGGCUGCCUCUUAAAGCCUGAUAA
...(((((.(((..(.(((-(((((((((....)).)).))))))))...)..)))..(((...))).........))))).((((((((((((....)))))).......))))))... ( -37.11)
>consensus
AAACAAAUCGCUGGCGAUU_UUCCCCUGCCAGUGCGAGCGGGAAAGUAUAGAAAGCUGCUCAAUGAGAAUCAAUAAAUUUGCUCAGGC___GGCAGUGGCUGCCACUUAAAGCCUGAUAG
...(((((((((((((..........)))))))).((((((..............))))))...............))))).((((((...(((((...))))).......))))))... (-30.22 = -30.86 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:57 2006