Locus 7906

Sequence ID 3L_DroMel_CAF1
Location 21,048,596 – 21,048,715
Length 119
Max. P 0.747070
window12883

overview

Window 3

Location 21,048,596 – 21,048,715
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.38
Mean single sequence MFE -16.69
Consensus MFE -13.95
Energy contribution -13.70
Covariance contribution -0.25
Combinations/Pair 1.09
Mean z-score -1.66
Structure conservation index 0.84
SVM decision value 0.47
SVM RNA-class probability 0.747070
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21048596 119 - 23771897
CCACU-ACCAAUGAGCCGAGACCCCAAAGCCCAAACCAAAACAAAACCCAAGCCCAAAACUACCUGGUCAACAGCAGGCAACUUACAACUACUUGGGCGCAACUUUCACUAAUUUUCAAU
.....-...........((((.......((((((.................(.(((........))).)......((....)).........)))))).....))))............. ( -14.90)
>DroSec_CAF1 103766 115 - 1
CCACU-ACCAAAGAGCCGAGAC-CCAAAGCCCAAGCGAAAACAAAACCCAAGCCCAAAACAACCUGGUCAACAGCGGGCAACUUACAA---CUUGGGCGCAACUUUCACUAAUUUUCAAU
.....-...........((((.-.....(((((((.(....).........((((........(((.....))).)))).........---))))))).....))))............. ( -20.00)
>DroSim_CAF1 10017 101 - 1
CCACU-AC---------------CCAAAGACCAAGCCAAAACAAAACCCAAGCCCAAAACAACCUGGUCAACAGCGGGCAACUUACAA---CUUGGGCGCAACUUUCACUAAUUUUCAAU
.....-..---------------............................((((((......(((.....))).((....)).....---.))))))...................... ( -13.70)
>DroEre_CAF1 25750 116 - 1
CCACAGACCCAAGACCCAAGAC-CCAAAACCCAAGCCGAAACAAAAUCCAAGCCCAAAACAACCUGGUCAACAGCAGGCAACUUGCAA---CUUGGGCGCAACUUUCACUAAUUUUCAAU
.....(.((((((......(((-(..........((.((.......))...))............))))....((((....).)))..---)))))))...................... ( -18.15)
>consensus
CCACU_ACCAAAGAGCCGAGAC_CCAAAGCCCAAGCCAAAACAAAACCCAAGCCCAAAACAACCUGGUCAACAGCAGGCAACUUACAA___CUUGGGCGCAACUUUCACUAAUUUUCAAU
...................................................((((((......(((.....))).((....)).........))))))...................... (-13.95 = -13.70 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:20 2006