| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,033,503 – 21,033,623 |
| Length | 120 |
| Max. P | 0.863931 |
| Location | 21,033,503 – 21,033,623 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.22 |
| Mean single sequence MFE | -34.34 |
| Consensus MFE | -34.31 |
| Energy contribution | -34.31 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.82 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.863931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21033503 120 + 23771897 UUUGUUAGCCGUCUAAAAAUAACGCCAAGAGUUCAGACUUAAGGAUCUGGCACUGCGCGCGCGUGUGUGUGAAAGGUUCUUUUUUAAUGGUCAAGCACUUGGGCAGCGAACAAAAAAAAA ((((((.((.((((((.......((((.((((....))))((((((((..(((.(((((....))))))))..))))))))......)))).......)))))).)).))))))...... ( -34.34) >DroSec_CAF1 88629 120 + 1 UUUGUUAGCCGUCUAAAAAUAACGCCAAGAGUUCAGACUUAAGGAUCUGGCACUGCGCGCGUGUGUGUGUGAAAGGUUCUUUUUUAAUGGUCAAGCACUUGGGCAGCGAACAAAAAAAAA ((((((.((.((((((.......((((.((((....))))((((((((..(((.(((((....))))))))..))))))))......)))).......)))))).)).))))))...... ( -34.34) >DroEre_CAF1 10285 116 + 1 UUUGUUAGCCGUCUAAAAAUAACGCCAAGAGUUCAGACUUAAGGAUCUGGCACUGCGCGCGUGUGUGUGUGAAAGGUUCUU--UUAAUGGUCAAGCACUUGGGCAGCGAACAAAA--AAA ((((((.((.((((((.......((((.((((....))))((((((((..(((.(((((....))))))))..))))))))--....)))).......)))))).)).)))))).--... ( -34.34) >consensus UUUGUUAGCCGUCUAAAAAUAACGCCAAGAGUUCAGACUUAAGGAUCUGGCACUGCGCGCGUGUGUGUGUGAAAGGUUCUUUUUUAAUGGUCAAGCACUUGGGCAGCGAACAAAAAAAAA ((((((.((.((((((.......((((.((((....))))((((((((..(((.(((((....))))))))..))))))))......)))).......)))))).)).))))))...... (-34.31 = -34.31 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:25 2006