Locus 7876

Sequence ID 3L_DroMel_CAF1
Location 21,029,704 – 21,029,824
Length 120
Max. P 0.734254
window12819

overview

Window 9

Location 21,029,704 – 21,029,824
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -29.60
Consensus MFE -27.42
Energy contribution -27.20
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.92
Structure conservation index 0.93
SVM decision value 0.43
SVM RNA-class probability 0.734254
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21029704 120 + 23771897
AACUUGUUGCAGGCUUAUUAAUUUGGCUCGGAGCACCGAGAGCACAACUAAAACAAGUUGAUUUAGGUGAAGUAAUUUGCGUGCAACCAGACACUAAACACUGAAACCGAACACUAAACA
..((.((((((.((..((((.(((..(((((....)))))....(((((......)))))........))).))))..)).)))))).)).............................. ( -28.00)
>DroSec_CAF1 84727 120 + 1
AACUUGUUGCAGGCUUAUUAAUUUGGCUCGGAGCACCGAAAGCUCAACUAAAACAAGUUGAUUUAGGUGAAGUAAUUUGCGUGCAGCCAGACACUAAACAGUGAAACCGAACACUAAACA
..((.((((((.((..((((.(((.((((((....))))....((((((......)))))).....)).)))))))..)).)))))).)).((((....))))................. ( -31.00)
>DroEre_CAF1 6385 120 + 1
AACUUGUUGCAGGCUUAUUAAUUUGGCUCGGAGCACCGAAAGCACAACUAAAACAAGUUGAUUUAGGUGAAGUAAUUUGCGUGCAGCCAGACACUAAACACUGAAACCGAGCACUAAACA
....((((..((((((.....((((((((((....))))..((((..(((((.(.....).)))))(..((....))..))))).))))))((........)).....)))).)).)))) ( -29.80)
>consensus
AACUUGUUGCAGGCUUAUUAAUUUGGCUCGGAGCACCGAAAGCACAACUAAAACAAGUUGAUUUAGGUGAAGUAAUUUGCGUGCAGCCAGACACUAAACACUGAAACCGAACACUAAACA
..((.((((((.((..((((.(((.(((..((((.......)).(((((......))))).))..))).)))))))..)).)))))).)).............................. (-27.42 = -27.20 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:15 2006