Locus 7860

Sequence ID 3L_DroMel_CAF1
Location 21,006,385 – 21,006,492
Length 107
Max. P 0.851408
window12797

overview

Window 7

Location 21,006,385 – 21,006,492
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.10
Mean single sequence MFE -48.19
Consensus MFE -28.63
Energy contribution -30.97
Covariance contribution 2.34
Combinations/Pair 1.26
Mean z-score -2.05
Structure conservation index 0.59
SVM decision value 0.79
SVM RNA-class probability 0.851408
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21006385 107 - 23771897
CGAGGAGAUAGCAUGGUCAUCCGCUGGUGGCAUUCCUCCUGCCGCUGUAGCUGCUGCAACGGCAGCCUGCAUUUGA------GCGGCAUAAACGCCGGCU---CCUCCAGCCACUC----
.((((((...((...((((((....))))))........(((((((((((((((((...)))))).)))).....)------)))))).....))...))---)))).........---- ( -42.20)
>DroSec_CAF1 24018 107 - 1
CGAGGAGAUGGCAUGGUCAUCAGCUGGUGGCAUUCCUCCUGCCGCUGUAGCUGCUGCAACGGCAGCCUGCAUUUGA------GCGGCAUAAACACCUGCU---CCGCCAGCCACUC----
.(((..((((((...)))))).((((((((((.......(((((((((((((((((...)))))).)))).....)------))))))........))).---.)))))))..)))---- ( -44.26)
>DroSim_CAF1 32537 107 - 1
CGAGGAGAUGGCAUGGUCAUCAGCUGGUGGCAUUCCUCCUGCCGCUGUAGCCGCUGCAACGGCAGCCUGCAUUUGA------GCGGCAUAAACACCGGCU---CCGGCAGCCACUC----
....(((.((((...(((...((((((((..........(((((.(((((...))))).)))))(((.((......------))))).....))))))))---..))).)))))))---- ( -44.10)
>DroEre_CAF1 32603 107 - 1
CGAGGAGAUGGCAUGGUCGUCUGCUGGUGGUAUUCCUCCCGCCGCUGUGGCUGCUGCAACGGCAGCCUGCAUUUGA------GCGGCAUACACACCGGCU---CCUCCAGCCACUC----
....(((.((((.(((..(...(((((((((((.......((((((((((((((((...)))))))).)).....)------))))))))).))))))).---)..))))))))))---- ( -50.01)
>DroWil_CAF1 2727 120 - 1
CGAGGAUAUUGCAUGAUCAUCCGCCGGCGGUAUACCGCCCACAGCUGUGGCAGCUGCCACAGCAGCCUGCAUCUGGGCAGCAGCGGCAUACUGACCGGCGACAACGCCAGCGGCGCUAAC
...(((((((....))).))))(((((((((((.((((.....((((((((....)))))))).((((......))))....)))).)))))).))))).....((((...))))..... ( -57.20)
>DroAna_CAF1 20363 101 - 1
CGAGGAUAUGGCAUGGUCGUCGGCCGGCGGCAGGCCACCCACGGCCGUGGCAGCUGCCACUGCGGCCUGCAUCUGG------GCGGCAUAGCCACCGGCU---CCGCCG------C----
(((.(((........))).)))(((((.(((.((((......))))(((((....)))))(((.((((......))------)).)))..))).))))).---......------.---- ( -51.40)
>consensus
CGAGGAGAUGGCAUGGUCAUCAGCUGGUGGCAUUCCUCCCGCCGCUGUAGCUGCUGCAACGGCAGCCUGCAUUUGA______GCGGCAUAAACACCGGCU___CCGCCAGCCACUC____
....(((.((((.((((....((((((((..............(((((.((....)).))))).(((.((............))))).....)))))))).....))))))))))).... (-28.63 = -30.97 +   2.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:53 2006