Locus 786

Sequence ID 3L_DroMel_CAF1
Location 2,348,079 – 2,348,179
Length 100
Max. P 0.588907
window1209

overview

Window 9

Location 2,348,079 – 2,348,179
Length 100
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 76.21
Mean single sequence MFE -21.91
Consensus MFE -14.70
Energy contribution -14.90
Covariance contribution 0.20
Combinations/Pair 1.29
Mean z-score -1.42
Structure conservation index 0.67
SVM decision value 0.11
SVM RNA-class probability 0.588907
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2348079 100 + 23771897
CCCCUUCCUUUAUCGGUAAACCAGAUACCCUUUCUUGAAAUUGAGGUAUAUUAACGAUGAAGUAAGAUAUGCAAAAUGUAAAAACUU-----------------UUGAUCACUGUUU
...(((.(((((((((....))..(((((...((........)))))))......))))))).))).....(((((.((....))))-----------------))).......... ( -16.20)
>DroSec_CAF1 97190 100 + 1
CCCCUUCCUUUAUCGGUAAACCAGAUACCCUUUCUUGAAUUUGAGGUAUAUAAACGAUGAAGGAAGUUAUGCAAAACGUAAAAACUU-----------------UUAAUCAAUGUUU
...(((((((((((((....))..(((((...((........)))))))......)))))))))))(((((.....)))))......-----------------............. ( -22.00)
>DroSim_CAF1 98141 99 + 1
CCCCUUCCUUUAUCGGUAAACCAGAUACCCUUUCUUGA-UUUGAGGUAUAUUAACGAUGAAGGAAGUUAUGCAAAAUGUAAAAACUU-----------------UUGAUCACUGUUU
...(((((((((((((....))..((((((........-...).)))))......))))))))))).....(((((.((....))))-----------------))).......... ( -22.30)
>DroEre_CAF1 103887 116 + 1
CCCCUUCCUUUAUCGGUAAACCGCCUUCCCU-UCUGGAAACUGAGGUAUAUUAAUGAUGUAGAGAGAUAUGCAAAAAUUAGAAACUUCUAAAAAAGAGGAAUGUUUGAUUACUGCUU
...((..((.(((((((.....)))....((-((.(....).)))).........)))).))..))....(((..(((((((..(((((.....)))))....)))))))..))).. ( -23.70)
>DroYak_CAF1 100422 116 + 1
UCUUUUUCUUUAUCGGUAAACCACCUUCCCU-UCUGGUAACUGGGGUAUAUUAACGAUAAAGGGAGAUGUGCUAAAAUUAAAAACUUCUGCAAAUGAGUAAUGUUUAUUCAUUGUUU
..(((..(((((((((((.(((.((...((.-...)).....))))).)))...))))))))..)))..(((.................)))((((((((.....)))))))).... ( -25.33)
>consensus
CCCCUUCCUUUAUCGGUAAACCAGAUACCCUUUCUUGAAAUUGAGGUAUAUUAACGAUGAAGGAAGAUAUGCAAAAAGUAAAAACUU_________________UUGAUCACUGUUU
...(((((((((((((....))......((((..........)))).........)))))))))))................................................... (-14.70 = -14.90 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:09 2006