Locus 7853

Sequence ID 3L_DroMel_CAF1
Location 20,997,864 – 20,997,963
Length 99
Max. P 0.783222
window12785

overview

Window 5

Location 20,997,864 – 20,997,963
Length 99
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 95.96
Mean single sequence MFE -23.32
Consensus MFE -20.75
Energy contribution -20.88
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.89
Structure conservation index 0.89
SVM decision value 0.56
SVM RNA-class probability 0.783222
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20997864 99 - 23771897
GAGCGUCUGCGCAUCAUUCUUUGCCAUUUUAUCUUUGGUUUAGUUUUGGAAUUCCAAGAGUCGCGUCGCGCGGCUACAUUCUUUUUGUUUAUUACUUCU
(((((....))).))...((..((((.........))))..))((((((....))))))((((((...))))))......................... ( -22.20)
>DroSec_CAF1 15432 99 - 1
GAGCGGCUGCGCAUCAUUCUUUGCCAUUUUAUCUUUGGUUUAGUUUUGGAAUUCCAAGUGUCGCGUUGCGCGGCUACAUUCUUUUUGUUAAUUACUUCU
..(..((((((((.(...((..((((.........))))..)).(((((....)))))......).))))))))..)...................... ( -26.10)
>DroSim_CAF1 22885 99 - 1
GAGCGGCUGCGCAUCAUUCUUUGCCAUUUUAUCUUUGGUUUAGUUUUGGAAUUUCAAGUGUCGCGUUGCGCGGCUACAUUCUUUUUGUUAAUUACUUCU
..(..((((((((.(...((..((((.........))))..)).(((((....)))))......).))))))))..)...................... ( -22.50)
>DroYak_CAF1 21644 99 - 1
GAGCGGCUGCGCAUCAUUCUUUGCCAUUUUAUCUUUGGUUUAGUUUUGGAAUUCCAAGAGUCGCGUCGCGCAACUACAUUCUUUUUGUUUAUUACUUCU
..(((((.((((......((..((((.........))))..))((((((....))))))).)))))))).............................. ( -22.50)
>consensus
GAGCGGCUGCGCAUCAUUCUUUGCCAUUUUAUCUUUGGUUUAGUUUUGGAAUUCCAAGAGUCGCGUCGCGCGGCUACAUUCUUUUUGUUAAUUACUUCU
..(.((((((((......((..((((.........))))..)).(((((....))))).........)))))))).)...................... (-20.75 = -20.88 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:42 2006