Locus 7825

Sequence ID 3L_DroMel_CAF1
Location 20,948,467 – 20,948,571
Length 104
Max. P 0.768226
window12738

overview

Window 8

Location 20,948,467 – 20,948,571
Length 104
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 75.34
Mean single sequence MFE -21.22
Consensus MFE -11.32
Energy contribution -12.12
Covariance contribution 0.79
Combinations/Pair 1.21
Mean z-score -1.79
Structure conservation index 0.53
SVM decision value 0.52
SVM RNA-class probability 0.768226
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20948467 104 - 23771897
ACACAAAAAUGGCAAAAACGAAGAGCAGCCAAGCAAGCAGCGGAAGAAUGUGGAACAUACAUUUUUGUCGUCAAGACGGCGGAA-AAGAGUGGGCUUGAGAAUUG
.........((((..............))))..(((((.((..(((((((((.....)))))))))(((((....)))))....-....))..)))))....... ( -24.34)
>DroPse_CAF1 212658 88 - 1
A----GCAAU-GCAAAAAGAAAAAG-----AAGCAAAAAACGGAAGAAUGUGGAACAUU------UUUCGGUGGGCCGACGAGA-GAGCUAUGGCUAUGGCUAUG
.----....(-((............-----..)))....((.((((((((.....))))------)))).)).(((((.(....-)(((....))).)))))... ( -19.74)
>DroSec_CAF1 205147 104 - 1
ACACAAAAAUGGCAAAAACGAAGAGCAGCCAAGCAAGCAGCGGAAGAAUGUGGAACAUACAUUUUUGUCGUCAAGACGGCGGAA-AAGAGAGGGCUUGAGAAUUG
.........((((..............))))..(((((..(..(((((((((.....)))))))))(((((....)))))....-....)...)))))....... ( -22.94)
>DroSim_CAF1 202051 104 - 1
ACACAAAAAUGGCAAAAACGAAGAGCAGCCAAGCAAGCAGCGAAAGAAUGUGGAACAUACAUUUUUGUCGUCAAGACGGCGGAA-AAGAGAGGGCUUGAGAAUUG
.........((((..............))))..(((((..(..(((((((((.....)))))))))(((((....)))))....-....)...)))))....... ( -22.84)
>DroYak_CAF1 220077 105 - 1
ACACAAAAAUGGCAAAAACGAAGAGCAGCCAAGCAAGCAGCGGAAGAAUGUGGAACAUACAUUUUUGUCGUCAAGACGGUGGAAAAAGAGAGGGCUUGAGAAUUG
.........((((..............))))..(((((..(....)..((((.....))))((((..((((....))))..))))........)))))....... ( -20.34)
>DroPer_CAF1 213524 82 - 1
A----GCAAU-GCAAAAAGAAAAAG-----AAGCAAAAAACGGAAGAAUGUGGAACAUU------UUUCGGUGGGCCGACGAGA-GAGCUAUGGCU------AUG
(----((...-((............-----..((.....((.((((((((.....))))------)))).))..))...(....-).))....)))------... ( -17.10)
>consensus
ACACAAAAAUGGCAAAAACGAAGAGCAGCCAAGCAAGCAGCGGAAGAAUGUGGAACAUACAUUUUUGUCGUCAAGACGGCGGAA_AAGAGAGGGCUUGAGAAUUG
.............................(((((......(....).................((((((((....))))))))..........)))))....... (-11.32 = -12.12 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:57 2006