Locus 7822

Sequence ID 3L_DroMel_CAF1
Location 20,936,587 – 20,936,678
Length 91
Max. P 0.680789
window12734

overview

Window 4

Location 20,936,587 – 20,936,678
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 88.28
Mean single sequence MFE -22.53
Consensus MFE -16.33
Energy contribution -18.71
Covariance contribution 2.38
Combinations/Pair 1.04
Mean z-score -1.76
Structure conservation index 0.73
SVM decision value 0.31
SVM RNA-class probability 0.680789
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20936587 91 - 23771897
AUUUGCAAAAGCUCGGUACUCGAUACUCUGUAUUCGAUACUGCAUUGAGUAUGAGUACUCAGUUAAAUACUUUGGUUUUGGUGCCGCAUGU
...(((...((((.(((((((.((((((((((........))))..))))))))))))).)))).........(((......))))))... ( -26.80)
>DroSec_CAF1 192820 91 - 1
AUUUGCAAAUACUCGAUACUCGAUACUCUGUAUUCGAUACUGGAUUGAGUAUGAGUACUCAGUUCAAUACUUUGGUUUUGGUGCCGCAUGU
...(((...(((((.(((((((((.((..((((...)))).))))))))))))))))................(((......))))))... ( -22.60)
>DroSim_CAF1 189756 91 - 1
ACUUGCAAAUACUCGGUACUCGAUACUCUGUAUUCGAUACUGGAUUGAGUAUGAGUACUCAGUUCAAUACUUUGGUUUUGGUGCCGCAUGU
((.(((....(((.(((((((.((((((...(((((....))))).))))))))))))).)))..........(((......)))))).)) ( -26.70)
>DroEre_CAF1 193937 79 - 1
UUUUGCAAAUACUCGGUACUCGGUACUCUGUAUUCGAUACUGGAUUGAUU------------UUAAAUACUUUGGUUUUGGUGCCGCAUGU
.............((((((.(((.(((..(((((((((.....)))))..------------....))))...))).)))))))))..... ( -14.00)
>consensus
AUUUGCAAAUACUCGGUACUCGAUACUCUGUAUUCGAUACUGGAUUGAGUAUGAGUACUCAGUUAAAUACUUUGGUUUUGGUGCCGCAUGU
.............((((((.(((.(((..(((((.......((((((((((....)))))))))))))))...))).)))))))))..... (-16.33 = -18.71 +   2.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:53 2006