| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,887,646 – 20,887,743 |
| Length | 97 |
| Max. P | 0.615513 |
| Location | 20,887,646 – 20,887,743 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 78.79 |
| Mean single sequence MFE | -18.04 |
| Consensus MFE | -11.42 |
| Energy contribution | -11.54 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20887646 97 - 23771897 --GGC-----AGAAAUCGGUUAAUUAAAGUUGUACAA-AGUUCCA-AGCCGAUUUCAUGCCGCGUUGAAUCAACAAAUUGUAAACUUUUCCGUACUAUC-CA------ACUAA------ --(((-----(((((((((((.....((.((.....)-).))...-)))))))))).))))(((..(((...((.....))....)))..)))......-..------.....------ ( -20.50) >DroPse_CAF1 158229 103 - 1 --AGC-----AGAAAUCGGUUAAUUAAAGUUCAACAA-AGUUUCAAAACCGAUUUCAUGCCGCGUUGAAUCAACAAAUUGUAAACUUUUC-AAACUAUU-CA------GCCCAGCCCCC --.((-----(((((((((((....(((.((.....)-).)))...)))))))))).))).(.(((((((.........(....).....-.....)))-))------)).)....... ( -18.61) >DroGri_CAF1 163923 99 - 1 AUAGA-----AAAAAUCGGUUAAUUAAAGUUCAACAA-AGUUGAA-AACCGAUUUCAUGCCGCGUUGAAUCAACAAAUUGUAAACUUUUUCAAGCCAAC-AA------GCUGA------ ...((-----(((((((((((........((((((..-.))))))-)))))))).........((((...))))............))))).(((....-..------)))..------ ( -16.20) >DroMoj_CAF1 173662 106 - 1 AUAGAAACCUAAAAAUCGUUUAAUUAAAGUUCAACAAAAGUUGAA-AAGCGAUUUCAUGCCGCGUUGAAUCAACAAAUUGUAAACUCUACCAAAGCGCCAAA------GCGAG------ ............(((((((((........((((((....))))))-)))))))))..((.(((((((...)))).....(((.....)))....))).))..------.....------ ( -16.40) >DroAna_CAF1 143620 102 - 1 --AGC-----AGAAAUCGGUUAAUUAAAGUUGAACAA-AGUUCCA-AGCCGAUUUCAUGCCGCGUUGAAUCAACAAAUUGUAAACUUUUC-AUACCAUC-GGACUAAAACUGA------ --.((-----((((((((((((((....)))((((..-.))))..-)))))))))).)))...((((...))))................-......((-((.......))))------ ( -17.90) >DroPer_CAF1 158615 103 - 1 --AGC-----AGAAAUCGGUUAAUUAAAGUUCAACAA-AGUUUCAAAACCGAUUUCAUGCCGCGUUGAAUCAACAAAUUGUAAACUUUUC-AAACUAUU-CA------GCCCAGCCCCC --.((-----(((((((((((....(((.((.....)-).)))...)))))))))).))).(.(((((((.........(....).....-.....)))-))------)).)....... ( -18.61) >consensus __AGC_____AGAAAUCGGUUAAUUAAAGUUCAACAA_AGUUCCA_AACCGAUUUCAUGCCGCGUUGAAUCAACAAAUUGUAAACUUUUC_AAACCAUC_CA______GCUAA______ ...........((((((((((..........((((....))))...)))))))))).......((((...))))............................................. (-11.42 = -11.54 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:28 2006