| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 293,641 – 293,732 |
| Length | 91 |
| Max. P | 0.683000 |
| Location | 293,641 – 293,732 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 74.80 |
| Mean single sequence MFE | -20.93 |
| Consensus MFE | -13.94 |
| Energy contribution | -13.78 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.683000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 293641 91 - 23771897 CCUACAC-U-UAU---------CC----UUCCU-----GCAGGCAUCAUCUGUGGCUCAGAGUCGGACCAAAUAUCUCUGAAUCGCAUAUGCCACUCACAUGAGUCGCUUG .......-.-...---------..----.....-----((.(((((....((((..((((((.............))))))..)))).)))))((((....)))).))... ( -24.52) >DroVir_CAF1 8589 105 - 1 UAUACAC-CCUACCCUUCACCCCUUUCAUCACG-----UCAGGCAUCAUAUGUGGAUCGGAGUCGGACCAAAUAUCUCUGAAUCGCAUAUGCCACUCACAUGAAUCGCUCG .......-....................(((.(-----(.((....(((((((((.((((((.............)))))).)))))))))...)).)).)))........ ( -21.52) >DroEre_CAF1 3445 91 - 1 CCUACAC-U-AAU---------CC----UUCCU-----GCAGGCAUCAUCUGUGGCUCGGAGUCGGACCAAAUAUCUCUGAAUCGCAUAUGCCACUCACACGAGUCGCUGG .......-.-...---------..----..((.-----((.(((((....((((..((((((.............))))))..)))).)))))((((....)))).)).)) ( -25.32) >DroWil_CAF1 5949 97 - 1 UUUUCUCCC-UAU---------CC----UCCCCUUAUAACAGGUAUCAUCUGUGGCUCGGAAUCGGACCAAUUAUCACUGAACCGCAUAUGCCACUCACAUGAAUCGUUGG .........-...---------..----........((((.(((.((((..(((((.(((..((((...........)))).))).....)))))....))))))))))). ( -16.50) >DroMoj_CAF1 7200 97 - 1 UAUAUAC-CUUUU--------CCCUUCAUCUCG-----GUAGGCAUUAUAUGUGGCUCAGAGUCAGACCAGAUAUCCCUAAAUCGCAUCUGCCAUUCCCAUGAGUCUCUUG (((((((-((...--------((.........)-----).)))...)))))).((((((((((((((...(((........)))...))))..))))...))))))..... ( -16.00) >DroAna_CAF1 4129 92 - 1 CAUACAC-UUUAU---------AC----CGCCU-----GCAGGCAUCAUCUGUGGCUCAGAGUCGGACCAAAUCUCCUUGAACCGCAUAUGCCACUCACAUGAGUCGCUCG .......-.....---------..----.(((.-----...))).......((((((((((((.((..(((......)))..))((....)).))))...))))))))... ( -21.70) >consensus CAUACAC_C_UAU_________CC____UCCCU_____GCAGGCAUCAUCUGUGGCUCAGAGUCGGACCAAAUAUCUCUGAAUCGCAUAUGCCACUCACAUGAGUCGCUCG .........................................(((((....(((((.((((.................)))).))))).)))))((((....))))...... (-13.94 = -13.78 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:45 2006