Locus 7798

Sequence ID 3L_DroMel_CAF1
Location 20,832,157 – 20,832,262
Length 105
Max. P 0.827389
window12690

overview

Window 0

Location 20,832,157 – 20,832,262
Length 105
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 83.10
Mean single sequence MFE -35.98
Consensus MFE -26.31
Energy contribution -28.06
Covariance contribution 1.75
Combinations/Pair 1.10
Mean z-score -1.90
Structure conservation index 0.73
SVM decision value 0.70
SVM RNA-class probability 0.827389
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20832157 105 + 23771897
GUAGGGUUUGGGU---UUUUCGGGUGCUUGAGAUUGGAGAGCAGCCUGUCAGACGUCAAAAAGCAGUUGCUAUCCGUUUCACCGCCCUCCAUAUCCCAUCAUCCAUCG
...((((.((((.---.....(((((..((((((.(((.((((((.(((.............))))))))).))))))))).))))).......))))..)))).... ( -34.94)
>DroEre_CAF1 88659 105 + 1
GCAGGGCUUGGGC---UUUUCGGGCGCUUGAGAUUGGAUAGCAGCCUGUCAGACGUCAAAAAGCAGUUGCUAUCCGUUUCACCGCCUCCCAGAUCCCAUCAUCCAUCG
...(((.(((((.---.....(((((..((((((.((((((((((.(((.............))))))))))))))))))).))))))))))..)))........... ( -38.62)
>DroYak_CAF1 86122 105 + 1
GUAGGGUUAGUGU---UUUUCGGGCGCUUGAGAUUGGAUAGCAGCCUGUCAGACGUCAAAAAGCAGUUGCUAUCCGUUUCACCGCCCCCCAUAUCCCAUCAUCCAUCC
...(((...(((.---.....(((((..((((((.((((((((((.(((.............))))))))))))))))))).)))))..)))..)))........... ( -35.32)
>DroAna_CAF1 88425 106 + 1
--AGAGUUGGGGGCAGAUAGUGGGGGCUUGAGAUUUUAGAGCAGUCUGUCAGACGUCAAAGAGCAGUUGCUAUUCGUUUCAACGCUCCGAGUAUCCCAUCAGCCGUAG
--.(.((((..((..((((.(.((((((((((((.....(((((.((((.............)))))))))....))))))).))))).).))))))..))))).... ( -35.02)
>consensus
GUAGGGUUUGGGU___UUUUCGGGCGCUUGAGAUUGGAGAGCAGCCUGUCAGACGUCAAAAAGCAGUUGCUAUCCGUUUCACCGCCCCCCAUAUCCCAUCAUCCAUCG
...((((..(((.........(((((..((((((.(((((((((.((((.............))))))))))))))))))).))))).......)))...)))).... (-26.31 = -28.06 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:11 2006