| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,790,725 – 20,790,824 |
| Length | 99 |
| Max. P | 0.845066 |
| Location | 20,790,725 – 20,790,824 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.69 |
| Mean single sequence MFE | -24.19 |
| Consensus MFE | -10.94 |
| Energy contribution | -13.33 |
| Covariance contribution | 2.39 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.845066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20790725 99 + 23771897 UAAGGUACUCAGCUUUUAAUGUAUUCACAUUUUGGAGGAGGGUGGAAAAUGUUCGCCACACAAUUUGUGGUAAAUU-UAUUCAACUUUAACAUUCGAACU-------------------- ((((((.(((..((...(((((....)))))..))..)))....(((...(((..(((((.....)))))..))).-..))).))))))...........-------------------- ( -21.50) >DroSec_CAF1 46272 102 + 1 UAAGGUACUCAGCCUUUAAUGUAUUCACAUUUCGGAGGAGGGUUGAAAAUGUUUGCCUCACAAUUUGUGGUAAAUU-UAUUCAACUUUAUCUUAAGGACUACA----------------- ((((((((((..((...(((((....)))))..))..)))(((((((...(((((((.((.....)).))))))).-..))))))).))))))).........----------------- ( -28.30) >DroSim_CAF1 44589 119 + 1 UAAGGUACUCAGCUUUUAAUGUAUUCACAUUUCGGAGGAGGGUGGAAAAUGUUUGCCGCACAAUUUGUGGUAAAUU-UAUUCAACUUUAUCUUAAGGACUACAUGUGAUUUAAUACGUUG .(((((.....)))))(((((((((((((((((..((((.(((.(((...((((((((((.....)))))))))).-..))).)))...))))..)))....))))))....)))))))) ( -29.80) >DroEre_CAF1 46131 102 + 1 UAAGGUACUUAGCUUUUAAUGUAUUCACAUUUCGGAGGAGGGUGCAAAAUGUUUGCCACACAAUUUGUGGCAAAUU-CAGUCAACUUUAUCUCAAGGACUACA----------------- ....((((((..((((.(((((....)))))..))))..)))))).....((((((((((.....)))))))))).-.((((..(((......)))))))...----------------- ( -24.80) >DroWil_CAF1 58022 78 + 1 CAAUAUA----------------UAUAUUUUUCGGCGGGUGUU-CAG-----ACCCCGCAGACUUUUCGCUGGAUUAUUUUUAAUUUGAUCAUUCCGAAU-------------------- .......----------------........((.(((((.((.-...-----))))))).))...((((...(((((.........)))))....)))).-------------------- ( -16.10) >DroYak_CAF1 44343 102 + 1 UAAGGUACUCAGCUUUUAAUGUAUUCACAUUGCGGAGGAGGGUGGAAAAUGUUUGCCACACAGUUUGUGGUAAAUU-UAUUAAACUUUAUCUUAAAGACUACA----------------- ((((((((((..((..((((((....)))))).))..)))(((.......((((((((((.....)))))))))).-......))).))))))).........----------------- ( -24.64) >consensus UAAGGUACUCAGCUUUUAAUGUAUUCACAUUUCGGAGGAGGGUGGAAAAUGUUUGCCACACAAUUUGUGGUAAAUU_UAUUCAACUUUAUCUUAAGGACUACA_________________ ((((((.(((..((...(((((....)))))..))..)))..........((((((((((.....))))))))))........))))))............................... (-10.94 = -13.33 + 2.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:56 2006