Locus 778

Sequence ID 3L_DroMel_CAF1
Location 2,331,941 – 2,332,037
Length 96
Max. P 0.500000
window1197

overview

Window 7

Location 2,331,941 – 2,332,037
Length 96
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 79.67
Mean single sequence MFE -23.80
Consensus MFE -16.79
Energy contribution -17.48
Covariance contribution 0.69
Combinations/Pair 1.12
Mean z-score -1.50
Structure conservation index 0.71
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2331941 96 + 23771897
---------------GUCGAAUAUU---------UUGGGUCCAGCAGACUUUUGCUACCACGCAAAUCACUGAGCCGAAAGCGAUUUGUCAAAUGCACUUUGCACUGAAUCGAAUCGAAA
---------------.((((...((---------((.((..(((..((..(((((......))))))).)))..)).))))((((((((((((.....)))).)).))))))..)))).. ( -23.10)
>DroSec_CAF1 81121 105 + 1
UACUUA-------UAGUCGAAUAUU--------UUUGGGUCCAGCAAACUUUUGCUACCACGCAAAUCACUGAGCCGAAAGUGAUUUGUCAAAUGCACUUUGCACCGAAUCGAAUCGAAA
......-------...((((.....--------(((((....(((((....))))).....((((((((((........))))))))))....(((.....)))))))).....)))).. ( -25.90)
>DroSim_CAF1 81368 104 + 1
UACCUA-------UAGUCGAAUAUU---------UUGGGUCCAGCAAACUUUUGCUACCACGCAAAUCACUGAGCCGAAAGUGAUUUGUCAAAUGCACUUUGCACCGAAUCGAAUCGAAA
......-------...((((.(..(---------((((....(((((....))))).....((((((((((........))))))))))....(((.....))))))))...).)))).. ( -25.50)
>DroEre_CAF1 86447 115 + 1
AACUUAUGUUCAAUAGUUGAAUAUUUGGCUAGUUCUGGGCCCAGCAAACUCUUACUACCACGCAAAUCACUGAACGAAAAGUGAUUUCCCAAAUGCACUUUUCAUCGAAUCG-----AAA
.......(((((.((((..(....)..))))((((((....)))..))).....................)))))(((((((((((.....))).)))))))).........-----... ( -20.70)
>consensus
UACUUA_______UAGUCGAAUAUU_________UUGGGUCCAGCAAACUUUUGCUACCACGCAAAUCACUGAGCCGAAAGUGAUUUGUCAAAUGCACUUUGCACCGAAUCGAAUCGAAA
................((((...............(((....(((((....))))).))).((((((((((........))))))))))....(((.....))).....))))....... (-16.79 = -17.48 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:57 2006