Locus 7777

Sequence ID 3L_DroMel_CAF1
Location 20,742,322 – 20,742,442
Length 120
Max. P 0.891424
window12663

overview

Window 3

Location 20,742,322 – 20,742,442
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -40.41
Consensus MFE -39.50
Energy contribution -38.62
Covariance contribution -0.88
Combinations/Pair 1.12
Mean z-score -1.85
Structure conservation index 0.98
SVM decision value 0.97
SVM RNA-class probability 0.891424
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20742322 120 - 23771897
CACAAGUACGGGCACCCAAAUGCCCGAGUGUAAGGUCUGGCGAAAUCCACUUAAUCUAUUUCGCGGCGCCGAGUACCAGAGAUUCUUUUGGGCCACCAGCAAGGAGCCGUUGACCUACUA
.(((....((((((......))))))..))).(((((..(((((((...........)))))))(((.((.....((((((....))))))((.....))..)).)))...))))).... ( -39.20)
>DroSim_CAF1 20856 120 - 1
CACAAGUACGGGCACCCAAAUGCCCGAGUGUAAGGUCUGGCGGAAUCCACUUAAUCUCUUUCGCGGCGCCGAGUACCAAAGAUUCUUUUGGGCUACCAGCAAGGAGCCAUUGACCUACUA
.(((....((((((......))))))..))).(((((..((((((.............))))))(((.((.....((((((....))))))((.....))..)).)))...))))).... ( -38.32)
>DroYak_CAF1 32257 120 - 1
AACAAGUACGGGCACCCAAAUGCCCGAGUGUAAGGUCUGGCGGAAUCCCCUCAAUCUUUUCCGCGGCGCUGAGUACCAGAGAUUCUUUUGGGCAACCAGCAAGGAGCCACUGACCUACUA
.(((....((((((......))))))..))).(((((.(((((((.............))))))(((.(((.....)))...(((((((((....)))).)))))))).).))))).... ( -43.72)
>consensus
CACAAGUACGGGCACCCAAAUGCCCGAGUGUAAGGUCUGGCGGAAUCCACUUAAUCUAUUUCGCGGCGCCGAGUACCAGAGAUUCUUUUGGGCAACCAGCAAGGAGCCAUUGACCUACUA
.(((....((((((......))))))..))).(((((..((((((.............))))))(((.((.....((((((....))))))((.....))..)).)))...))))).... (-39.50 = -38.62 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:43 2006