Locus 7769

Sequence ID 3L_DroMel_CAF1
Location 20,728,792 – 20,728,891
Length 99
Max. P 0.611211
window12649

overview

Window 9

Location 20,728,792 – 20,728,891
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 77.14
Mean single sequence MFE -10.70
Consensus MFE 0.00
Energy contribution 0.00
Covariance contribution 0.00
Combinations/Pair nan
Mean z-score -1.32
Structure conservation index -0.00
SVM decision value 0.16
SVM RNA-class probability 0.611211
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20728792 99 + 23771897
UGUUCGCCAGUGCUAAAUUGCAUAUUACCCAUCUGAAAUCUUGCUAAUCCACAUUUCCUUCAACCACAACUACUUCCUGGCUUUCCUGGCUAAUACUUU
((((.((((((((......)))....................((((...............................))))....))))).)))).... ( -12.28)
>DroSec_CAF1 4253 90 + 1
UGU---------AUAAAUUGUAUAUUACCCAUCUGAAAUCUUGGUAAUCCACAUUUCCUUCAACCACAACUACUUCCUGGCUUUCCUGGCUAAUACUUU
.((---------((....(((..((((((.............))))))..)))........................(((((.....)))))))))... ( -10.82)
>DroSim_CAF1 6597 90 + 1
UGU---------AUAAAUUGUUUAUUACCCAUCUGAAAUCUUGGUAAUCCACAUUUCCUUCAACCACAACUACUUCCUGGCUUUCCUGGCUAAUACUUU
.((---------((....(((..((((((.............))))))..)))........................(((((.....)))))))))... ( -10.82)
>DroEre_CAF1 5921 82 + 1
UA-----C---UCUAAAUUGUAUCUUGUCCAUACGGAAUCUUGCUAAUCCACGCUUCCUUCAUCCACAACUACUUCC---------UGGAUAAUACUUU
..-----.---........((((..((((((...((((....((........))...................))))---------))))))))))... (  -7.90)
>DroYak_CAF1 6137 85 + 1
GC-----CAGUGCUUAAUUGUUUUUUAUCCAUCUGAAAUCUAGCUAAUCCGCAUUUCCUUUAUACAGAAGUACUUCC---------UGGCUAAUACUUU
((-----((((((((...(((.(((((......)))))....((......))...........))).))))))....---------))))......... ( -11.70)
>consensus
UGU____C____CUAAAUUGUAUAUUACCCAUCUGAAAUCUUGCUAAUCCACAUUUCCUUCAACCACAACUACUUCCUGGCUUUCCUGGCUAAUACUUU
................................................................................................... (  0.00 =   0.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:29 2006