Locus 7762

Sequence ID 3L_DroMel_CAF1
Location 20,707,232 – 20,707,352
Length 120
Max. P 0.973442
window12641

overview

Window 1

Location 20,707,232 – 20,707,352
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.50
Mean single sequence MFE -36.43
Consensus MFE -33.41
Energy contribution -33.20
Covariance contribution -0.21
Combinations/Pair 1.14
Mean z-score -2.86
Structure conservation index 0.92
SVM decision value 1.71
SVM RNA-class probability 0.973442
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20707232 120 - 23771897
UCAUUAGUGAUUUAUUUGAGGCAAUCGACUCGGUGUUGCUCAGAUAAUUGGCGUUUUUGUUCCAUAUUUGAGCAGCAACGGGUGAAAUUUGGUGGGUCGAUUUGAGGGCAAGUAAACAAG
.......((.((((((((...((((((((((..(((((((((((((...((((....))))...)))))))))))))((.((......)).))))))))).)))....)))))))))).. ( -37.50)
>DroSim_CAF1 183 119 - 1
UCAUUAGUGAUUUAUUUGAGGCAAUCGAAUCGGUGUUGCUCAGAUAAUUGGCGAUUUUGUUCCAUAUUUGAGCAGCAACGGGUGAAAUUUGGUGGGUCGAU-UGAGGGCAAGUAAACAAG
.......((.((((((((...(((((((..(..(((((((((((((..(((.(((...)))))))))))))))))))((.((......)).)))..)))))-))....)))))))))).. ( -34.90)
>DroYak_CAF1 1165 119 - 1
UCAUAAGUGAUUUAUUCGAGGCAAUCGUUUCAGUGUUGCUCAAAUAAUUGGCGUUUUUGUUCCAUAUUUGAGCAGCAACGAGUGA-AUUUGGUGAGUCGAUUUGAGGGCAAAUAAACAUG
((((....((((((((((((((....)))))..(((((((((((((...((((....))))...)))))))))))))..))))))-)))..))))((..(((((....)))))..))... ( -36.90)
>consensus
UCAUUAGUGAUUUAUUUGAGGCAAUCGAAUCGGUGUUGCUCAGAUAAUUGGCGUUUUUGUUCCAUAUUUGAGCAGCAACGGGUGAAAUUUGGUGGGUCGAUUUGAGGGCAAGUAAACAAG
.......((.((((((((...(((((((((((.(((((((((((((...((((....))))...))))))))))))).(((((...))))).))))))))).))....)))))))))).. (-33.41 = -33.20 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:20 2006